| Phased diploid genome assembly with single-molecule real-time sequencing CS Chin, P Peluso, FJ Sedlazeck, M Nattestad, GT Concepcion, A Clum, ... Nature methods 13 (12), 1050-1054, 2016 | 1840 | 2016 |
| GenomeScope: fast reference-free genome profiling from short reads GW Vurture, FJ Sedlazeck, M Nattestad, CJ Underwood, H Fang, ... Bioinformatics 33 (14), 2202-2204, 2017 | 1447 | 2017 |
| Accurate detection of complex structural variations using single-molecule sequencing FJ Sedlazeck, P Rescheneder, M Smolka, H Fang, M Nattestad, ... Nature methods 15 (6), 461-468, 2018 | 1401 | 2018 |
| A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023 | 543 | 2023 |
| Assemblytics: a web analytics tool for the detection of variants from an assembly M Nattestad, MC Schatz Bioinformatics 32 (19), 3021-3023, 2016 | 324 | 2016 |
| Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads K Shafin, T Pesout, PC Chang, M Nattestad, A Kolesnikov, S Goel, G Baid, ... Nature methods 18 (11), 1322-1332, 2021 | 194 | 2021 |
| Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line M Nattestad, S Goodwin, K Ng, T Baslan, FJ Sedlazeck, P Rescheneder, ... Genome research 28 (8), 1126-1135, 2018 | 187 | 2018 |
| The effect of α-mating factor secretion signal mutations on recombinant protein expression in Pichia pastoris GP Lin-Cereghino, CM Stark, D Kim, J Chang, N Shaheen, H Poerwanto, ... Gene 519 (2), 311-317, 2013 | 181 | 2013 |
| Third-generation sequencing and the future of genomics H Lee, J Gurtowski, S Yoo, M Nattestad, S Marcus, S Goodwin, ... BioRxiv, 048603, 2016 | 178 | 2016 |
| Ultrarapid nanopore genome sequencing in a critical care setting JE Gorzynski, SD Goenka, K Shafin, TD Jensen, DG Fisk, ME Grove, ... New England Journal of Medicine 386 (7), 700-702, 2022 | 172 | 2022 |
| PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions ND Olson, J Wagner, J McDaniel, SH Stephens, ST Westreich, ... Cell genomics 2 (5), 2022 | 143 | 2022 |
| DeepConsensus improves the accuracy of sequences with a gap-aware sequence transformer G Baid, DE Cook, K Shafin, T Yun, F Llinares-López, Q Berthet, ... Nature Biotechnology 41 (2), 232-238, 2023 | 98 | 2023 |
| Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing SD Goenka, JE Gorzynski, K Shafin, DG Fisk, T Pesout, TD Jensen, ... Nature Biotechnology 40 (7), 1035-1041, 2022 | 73 | 2022 |
| Ribbon: intuitive visualization for complex genomic variation M Nattestad, R Aboukhalil, CS Chin, MC Schatz Bioinformatics 37 (3), 413-415, 2021 | 63 | 2021 |
| Analysis of the 5′ untranslated region (5′ UTR) of the alcohol oxidase 1 (AOX1) gene in recombinant protein expression in Pichia pastoris CA Staley, A Huang, M Nattestad, KT Oshiro, LE Ray, T Mulye, ZH Li, T Le, ... Gene 496 (2), 118-127, 2012 | 57 | 2012 |
| Complete telomere-to-telomere de novo assembly of the Plasmodium falciparum genome through long-read (>11 kb), single … SS Vembar, M Seetin, C Lambert, M Nattestad, MC Schatz, P Baybayan, ... DNA Research 23 (4), 339-351, 2016 | 55 | 2016 |
| Ribbon: Visualizing complex genome alignments and structural variation M Nattestad, CS Chin, MC Schatz BioRxiv, 082123, 2016 | 46 | 2016 |
| Haplotype-aware variant calling enables high accuracy in nanopore long-reads using deep neural networks K Shafin, T Pesout, PC Chang, M Nattestad, A Kolesnikov, S Goel, G Baid, ... BioRxiv, 2021.03. 04.433952, 2021 | 35 | 2021 |
| Gaps and complex structurally variant loci in phased genome assemblies D Porubsky, MR Vollger, WT Harvey, AN Rozanski, P Ebert, G Hickey, ... Genome research 33 (4), 496-510, 2023 | 27 | 2023 |
| An extensive sequence dataset of gold-standard samples for benchmarking and development G Baid, M Nattestad, A Kolesnikov, S Goel, H Yang, PC Chang, A Carroll bioRxiv, 2020.12. 11.422022, 2020 | 21 | 2020 |
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityVerified email at cs.jhu.edu
