| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update E Afgan, D Baker, B Batut, M Van Den Beek, D Bouvier, M Čech, J Chilton, ... Nucleic acids research 46 (W1), W537-W544, 2018 | 6481 | 2018 |
| Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences J Goecks, A Nekrutenko, J Taylor, Galaxy Team team@ galaxyproject. org Genome biology 11, 1-13, 2010 | 4282 | 2010 |
| Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution Project management: Fulton Lucinda A. 1 Mardis Elaine R. 1 Wilson Richard K. 1 Nature 432 (7018), 695-716, 2004 | 2964 | 2004 |
| Galaxy: a platform for interactive large-scale genome analysis B Giardine, C Riemer, RC Hardison, R Burhans, L Elnitski, P Shah, ... Genome research 15 (10), 1451-1455, 2005 | 2616 | 2005 |
| Genome sequence of the Brown Norway rat yields insights into mammalian evolution University of Utah Weiss Robert B. 14 Dunn Diane M. 14, ... Nature 428 (6982), 493-521, 2004 | 2587 | 2004 |
| Galaxy: a web‐based genome analysis tool for experimentalists D Blankenberg, GV Kuster, N Coraor, G Ananda, R Lazarus, M Mangan, ... Current protocols in molecular biology 89 (1), 19.10. 1-19.10. 21, 2010 | 1806 | 2010 |
| Ten simple rules for reproducible computational research GK Sandve, A Nekrutenko, J Taylor, E Hovig PLoS computational biology 9 (10), e1003285, 2013 | 868 | 2013 |
| Manipulation of FASTQ data with Galaxy D Blankenberg, A Gordon, G Von Kuster, N Coraor, J Taylor, ... Bioinformatics 26 (14), 1783-1785, 2010 | 826 | 2010 |
| Evolutionary analyses of the human genome WH Li, Z Gu, H Wang, A Nekrutenko Nature 409 (6822), 847-849, 2001 | 565 | 2001 |
| Complete Khoisan and Bantu genomes from southern Africa SC Schuster, W Miller, A Ratan, LP Tomsho, B Giardine, LR Kasson, ... Nature 463 (7283), 943-947, 2010 | 545 | 2010 |
| Transposable elements are found in a large number of human protein-coding genes A Nekrutenko, WH Li TRENDS in Genetics 17 (11), 619-621, 2001 | 510 | 2001 |
| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update V Jalili, E Afgan, Q Gu, D Clements, D Blankenberg, J Goecks, J Taylor, ... Nucleic acids research 48 (W1), W395-W402, 2020 | 496 | 2020 |
| HyPhy 2.5—a customizable platform for evolutionary hypothesis testing using phylogenies SL Kosakovsky Pond, AFY Poon, R Velazquez, S Weaver, NL Hepler, ... Molecular biology and evolution 37 (1), 295-299, 2020 | 461 | 2020 |
| Sequencing error profiles of Illumina sequencing instruments N Stoler, A Nekrutenko NAR genomics and bioinformatics 3 (1), lqab019, 2021 | 387 | 2021 |
| Next-generation sequencing data interpretation: enhancing reproducibility and accessibility A Nekrutenko, J Taylor Nature Reviews Genetics 13 (9), 667-672, 2012 | 372 | 2012 |
| The KA/KS ratio test for assessing the protein-coding potential of genomic regions: an empirical and simulation study A Nekrutenko, KD Makova, WH Li Genome research 12 (1), 198-202, 2002 | 339 | 2002 |
| 28-way vertebrate alignment and conservation track in the UCSC Genome Browser W Miller, K Rosenbloom, RC Hardison, M Hou, J Taylor, B Raney, ... Genome research 17 (12), 1797-1808, 2007 | 322 | 2007 |
| Dissemination of scientific software with Galaxy ToolShed D Blankenberg, G Von Kuster, E Bouvier, D Baker, E Afgan, N Stoler, ... Genome biology 15, 1-3, 2014 | 284 | 2014 |
| Comparative genomics W Miller, KD Makova, A Nekrutenko, RC Hardison Annu. Rev. Genomics Hum. Genet. 5 (1), 15-56, 2004 | 282 | 2004 |
| Maternal age effect and severe germ-line bottleneck in the inheritance of human mitochondrial DNA B Rebolledo-Jaramillo, MSW Su, N Stoler, JA McElhoe, B Dickins, ... Proceedings of the National Academy of Sciences 111 (43), 15474-15479, 2014 | 269 | 2014 |
James TaylorProfessor of Biology and Computer Science, Johns Hopkins UniversityVerified email at jhu.edu
