| Improved visualization of protein consensus sequences by iceLogo N Colaert, K Helsens, L Martens, J Vandekerckhove, K Gevaert Nature methods 6 (11), 786-787, 2009 | 754 | 2009 |
| Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans T Arnesen, P Van Damme, B Polevoda, K Helsens, R Evjenth, N Colaert, ... Proceedings of the National Academy of Sciences 106 (20), 8157-8162, 2009 | 618 | 2009 |
| LNCipedia: a database for annotated human lncRNA transcript sequences and structures PJ Volders, K Helsens, X Wang, B Menten, L Martens, K Gevaert, ... Nucleic acids research 41 (D1), D246-D251, 2013 | 581 | 2013 |
| NatF contributes to an evolutionary shift in protein N-terminal acetylation and is important for normal chromosome segregation P Van Damme, K Hole, A Pimenta-Marques, K Helsens, ... PLoS genetics 7 (7), e1002169, 2011 | 215 | 2011 |
| Human Proteinpedia enables sharing of human protein data S Mathivanan, M Ahmed, NG Ahn, H Alexandre, R Amanchy, PC Andrews, ... Nature biotechnology 26 (2), 164-167, 2008 | 179 | 2008 |
| Improved recovery of proteome‐informative, protein N‐terminal peptides by combined fractional diagonal chromatography (COFRADIC) A Staes, P Van Damme, K Helsens, H Demol, J Vandekerckhove, ... Proteomics 8 (7), 1362-1370, 2008 | 167 | 2008 |
| Complementary positional proteomics for screening substrates of endo-and exoproteases P Van Damme, A Staes, S Bronsoms, K Helsens, N Colaert, ... Nature methods 7 (7), 512-515, 2010 | 122 | 2010 |
| compomics-utilities: an open-source Java library for computational proteomics H Barsnes, M Vaudel, N Colaert, K Helsens, A Sickmann, FS Berven, ... BMC bioinformatics 12, 1-6, 2011 | 110 | 2011 |
| In vitro and in vivo protein-bound tyrosine nitration characterized by diagonal chromatography B Ghesquiere, N Colaert, K Helsens, L Dejager, C Vanhaute, K Verleysen, ... Molecular & Cellular Proteomics 8 (12), 2642-2652, 2009 | 110 | 2009 |
| A la carte proteomics with an emphasis on gel‐free techniques K Gevaert, P Van Damme, B Ghesquière, F Impens, L Martens, K Helsens, ... Proteomics 7 (16), 2698-2718, 2007 | 98 | 2007 |
| ms_lims, a simple yet powerful open source laboratory information management system for MS‐driven proteomics K Helsens, N Colaert, H Barsnes, T Muth, K Flikka, A Staes, E Timmerman, ... Proteomics 10 (6), 1261-1264, 2010 | 97 | 2010 |
| TraML—a standard format for exchange of selected reaction monitoring transition lists EW Deutsch, M Chambers, S Neumann, F Levander, PA Binz, J Shofstahl, ... Molecular & Cellular Proteomics 11 (4), 2012 | 84 | 2012 |
| Proteome-wide substrate analysis indicates substrate exclusion as a mechanism to generate caspase-7 versus caspase-3 specificity D Demon, P Van Damme, TV Berghe, A Deceuninck, J Van Durme, ... Molecular & Cellular Proteomics 8 (12), 2700-2714, 2009 | 77 | 2009 |
| Bioinformatics Analysis of a Saccharomyces cerevisiae N-Terminal Proteome Provides Evidence of Alternative Translation Initiation and Post-Translational N … K Helsens, P Van Damme, S Degroeve, L Martens, T Arnesen, ... Journal of proteome research 10 (8), 3578-3589, 2011 | 73 | 2011 |
| Analysis of the resolution limitations of peptide identification algorithms N Colaert, S Degroeve, K Helsens, L Martens Journal of proteome research 10 (12), 5555-5561, 2011 | 72 | 2011 |
| MS‐driven protease substrate degradomics F Impens, N Colaert, K Helsens, K Plasman, P Van Damme, ... Proteomics 10 (6), 1284-1296, 2010 | 72 | 2010 |
| A quantitative proteomics design for systematic identification of protease cleavage events F Impens, N Colaert, K Helsens, B Ghesquiere, E Timmerman, ... Molecular & Cellular Proteomics 9 (10), 2327-2333, 2010 | 71 | 2010 |
| MascotDatfile: an open‐source library to fully parse and analyse MASCOT MS/MS search results K Helsens, L Martens, J Vandekerckhove, K Gevaert Proteomics 7 (3), 364-366, 2007 | 62 | 2007 |
| Peptizer, a tool for assessing false positive peptide identifications and manually validating selected results K Helsens, E Timmerman, J Vandekerckhove, K Gevaert, L Martens Molecular & Cellular Proteomics 7 (12), 2364-2372, 2008 | 56 | 2008 |
| thermo-msf-parser: An Open Source Java Library to Parse and Visualize Thermo Proteome Discoverer msf Files N Colaert, H Barsnes, M Vaudel, K Helsens, E Timmerman, A Sickmann, ... Journal of proteome research 10 (8), 3840-3843, 2011 | 51 | 2011 |
