Josh L. Espinoza
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A new antibiotic selectively kills Gram-negative pathogens
Y Imai, KJ Meyer, A Iinishi, Q Favre-Godal, R Green, S Manuse, M Caboni, ...
Nature 576 (7787), 459-464, 2019
Host genetic control of the oral microbiome in health and disease
A Gomez, JL Espinoza, DM Harkins, P Leong, R Saffery, M Bockmann, ...
Cell host & microbe 22 (3), 269-278. e3, 2017
Posttranscriptional control of the stem cell and neurogenic programs by the nonsense-mediated RNA decay pathway
CH Lou, A Shao, EY Shum, JL Espinoza, L Huang, R Karam, ...
Cell reports 6 (4), 748-764, 2014
The antagonistic gene paralogs Upf3a and Upf3b govern nonsense-mediated RNA decay
EY Shum, SH Jones, A Shao, JN Chousal, MD Krause, WK Chan, CH Lou, ...
Cell 165 (2), 382-395, 2016
Coral microbiome manipulation elicits metabolic and genetic restructuring to mitigate heat stress and evade mortality
EP Santoro, RM Borges, JL Espinoza, M Freire, CSMA Messias, ...
Science Advances 7 (33), eabg3088, 2021
Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm
JM Michaud, LR Thompson, D Kaul, JL Espinoza, RA Richter, ZZ Xu, ...
Nature Communications 9 (1), 2017, 2018
Mechanism-of-action classification of antibiotics by global transcriptome profiling
A O’Rourke, S Beyhan, Y Choi, P Morales, AP Chan, JL Espinoza, ...
Antimicrobial agents and chemotherapy 64 (3), 10.1128/aac. 01207-19, 2020
Feathermoss and epiphytic Nostoc cooperate differently: expanding the spectrum of plant–cyanobacteria symbiosis
D Warshan, JL Espinoza, RK Stuart, RA Richter, SY Kim, N Shapiro, ...
The ISME journal 11 (12), 2821-2833, 2017
Supragingival plaque microbiome ecology and functional potential in the context of health and disease
JL Espinoza, DM Harkins, M Torralba, A Gomez, SK Highlander, ...
MBio 9 (6), 10.1128/mbio. 01631-18, 2018
A Upf3b-mutant mouse model with behavioral and neurogenesis defects
L Huang, EY Shum, SH Jones, CH Lou, J Chousal, H Kim, AJ Roberts, ...
Molecular psychiatry 23 (8), 1773-1786, 2018
Diatom centromeres suggest a mechanism for nuclear DNA acquisition
RE Diner, CM Noddings, NC Lian, AK Kang, JB McQuaid, J Jablanovic, ...
Proceedings of the National Academy of Sciences 114 (29), E6015-E6024, 2017
Influence of substrate concentration on the culturability of heterotrophic soil microbes isolated by high-throughput dilution-to-extinction cultivation
RP Bartelme, JM Custer, CL Dupont, JL Espinoza, M Torralba, B Khalili, ...
Msphere 5 (1), 10.1128/msphere. 00024-20, 2020
The airplane cabin microbiome
H Weiss, VS Hertzberg, C Dupont, JL Espinoza, S Levy, K Nelson, ...
Microbial ecology 77, 87-95, 2019
Predicting antimicrobial mechanism-of-action from transcriptomes: A generalizable explainable artificial intelligence approach
JL Espinoza, CL Dupont, A O’Rourke, S Beyhan, P Morales, A Spoering, ...
PLOS Computational Biology 17 (3), e1008857, 2021
Identification of novel post-transcriptional features in olfactory receptor family mRNAs
EY Shum, JL Espinoza, M Ramaiah, MF Wilkinson
Nucleic acids research 43 (19), 9314-9326, 2015
Coral microbiome manipulation elicits metabolic and genetic restructuring to mitigate heat stress and evade mortality. Sci Adv 7: eabg3088
EP Santoro, RM Borges, JL Espinoza, M Freire, C Messias, HDM Villela, ...
Transcriptomic study of substrate-specific transport mechanisms for iron and carbon in the marine copiotroph Alteromonas macleodii
LE Manck, JL Espinoza, CL Dupont, KA Barbeau
Msystems 5 (2), 10.1128/msystems. 00070-20, 2020
Interactions between fecal gut microbiome, enteric pathogens, and energy regulating hormones among acutely malnourished rural Gambian children
HM Nabwera, JL Espinoza, A Worwui, M Betts, C Okoi, AK Sesay, ...
EBioMedicine 73, 2021
Applications of weighted association networks applied to compositional data in biology
JL Espinoza, N Shah, S Singh, KE Nelson, CL Dupont
Environmental Microbiology 22 (8), 3020-3038, 2020
Genotypic diversity and unrecognized antifungal resistance among populations of Candida glabrata from positive blood cultures
H Badrane, S Cheng, CL Dupont, B Hao, E Driscoll, K Morder, G Liu, ...
Nature Communications 14 (1), 5918, 2023
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