| Validation of microsatellite instability detection using a comprehensive plasma-based genotyping panel J Willis, MI Lefterova, A Artyomenko, PM Kasi, Y Nakamura, K Mody, ... Clinical Cancer Research 25 (23), 7035-7045, 2019 | 227 | 2019 |
| Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction S Knyazev, V Tsyvina, A Shankar, A Melnyk, A Artyomenko, T Malygina, ... Nucleic acids research 49 (17), e102-e102, 2021 | 56 | 2021 |
| Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows P Skums, N Mancuso, A Artyomenko, B Tork, I Mandoiu, Y Khudyakov, ... BMC bioinformatics 14, 1-13, 2013 | 40 | 2013 |
| Inference of genetic relatedness between viral quasispecies from sequencing data O Glebova, S Knyazev, A Melnyk, A Artyomenko, Y Khudyakov, ... BMC genomics 18, 81-88, 2017 | 35 | 2017 |
| Long single-molecule reads can resolve the complexity of the influenza virus composed of rare, closely related mutant variants A Artyomenko, NC Wu, S Mangul, E Eskin, R Sun, A Zelikovsky Journal of Computational Biology 24 (6), 558-570, 2017 | 32 | 2017 |
| Cliquesnv: Scalable reconstruction of intra-host viral populations from ngs reads S Knyazev, V Tsyvina, A Melnyk, A Artyomenko, T Malygina, YB Porozov, ... BioRxiv, 264242, 2018 | 25 | 2018 |
| Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling P Skums, A Artyomenko, O Glebova, S Ramachandran, I Mandoiu, ... Bioinformatics 31 (5), 682-690, 2015 | 18 | 2015 |
| CliqueSNV: an efficient noise reduction technique for accurate assembly of viral variants from NGS data S Knyazev, V Tsyvina, A Shankar, A Melnyk, A Artyomenko, T Malygina, ... bioRxiv, 264242, 2020 | 12 | 2020 |
| Microsatellite instability detection by targeted sequencing of cell-free DNA A Artyomenko, M Sikora, M Lefterova, VM Raymond, D Gavino, ... Annals of Oncology 29, viii424, 2018 | 11 | 2018 |
| kgem: An em-based algorithm for local reconstruction of viral quasispecies A Artyomenko, N Mancuso, A Zelikovsky, P Skums, I Măndoiu 2013 IEEE 3rd International Conference on Computational Advances in Bio and …, 2013 | 9 | 2013 |
| Error correction of NGS reads from viral populations P Skums, A Artyomenko, O Glebova, DS Campo, Z Dimitrova, ... Computational Methods for Next Generation Sequencing Data Analysis, 329-353, 2016 | 6 | 2016 |
| Assessment of HCV infection stage as recent or chronic using multi-parameter analysis and machine learning PI Baykal, A Artyomenko, S Ramachandran, Y Khudyakov, A Zelikovsky, ... 2017 IEEE 7th International Conference on Computational Advances in Bio and …, 2017 | 5 | 2017 |
| kGEM: An Expectation Maximization Error Correction Algorithm for Next Generation Sequencing of Amplicon-based Data A Artyomenko, N Mancuso, P Skums, I Mandoiu, A Zelikovsky Proc. International Symposium Bioinformatics Research and Applications, 2013 | 4 | 2013 |
| Analytical validation of MSI high detection with GuardantOMNI J Zhao, A Artyomenko, C Artieri, J Latham, SR Fairclough, C Barbacioru, ... Cancer Research 79 (13_Supplement), 1675-1675, 2019 | 2 | 2019 |
| Reconstruction of infectious bronchitis virus quasispecies from ngs data B Tork, E Nenastyeva, A Artyomenko, N Mancuso, MI Khan, R O'Neill, ... Computational Methods for Next Generation Sequencing Data Analysis, 383-400, 2016 | 2 | 2016 |
| Detection of genetic relatedness between viral samples using EM-based clustering of next-generation sequencing data P Skums, A Artyomenko, O Glebova, A Zelikovsky, DS Campo, ... 2014 IEEE 4th International Conference on Computational Advances in Bio and …, 2014 | 2 | 2014 |
| Deterministic regression algorithm for transcriptome frequency estimation A Caciula, O Glebova, A Artyomenko, S Mangul, J Lindsay, II Măndoiu, ... 2014 IEEE 4th International Conference on Computational Advances in Bio and …, 2014 | 2 | 2014 |
| Transcriptome quantification and differential expression from NGS data O Glebova, Y Temate‐Tiagueu, A Caciula, S Al Seesi, A Artyomenko, ... Computational Methods for Next Generation Sequencing Data Analysis, 301-327, 2016 | 1 | 2016 |
| Pooling Strategy for Massive Viral Sequencing P Skums, A Artyomenko, O Glebova, S Ramachandran, DS Campo, ... Computational Methods for Next Generation Sequencing Data Analysis, 57-83, 2016 | 1 | 2016 |
| 2SNV: Quasispecies reconstruction from PacBio reads A Artyomenko, NC Wu, S Mangul, E Eskin, R Sun, A Zelikovsky 2015 IEEE 5th International Conference on Computational Advances in Bio and …, 2015 | 1 | 2015 |
Alexander ZelikovskyDistinguished University Professor at Georgia State UniversityVerified email at gsu.edu
