| Updates to the integrated protein–protein interaction benchmarks: docking benchmark version 5 and affinity benchmark version 2 T Vreven, IH Moal, A Vangone, BG Pierce, PL Kastritis, M Torchala, ... Journal of molecular biology 427 (19), 3031-3041, 2015 | 477 | 2015 |
| pyDock: Electrostatics and desolvation for effective scoring of rigid‐body protein–protein docking TMK Cheng, TL Blundell, J Fernandez‐Recio Proteins: Structure, Function, and Bioinformatics 68 (2), 503-515, 2007 | 397 | 2007 |
| Identification of protein–protein interaction sites from docking energy landscapes J Fernandez-Recio, M Totrov, R Abagyan Journal of molecular biology 335 (3), 843-865, 2004 | 327 | 2004 |
| SwarmDock: a server for flexible protein–protein docking M Torchala, IH Moal, RAG Chaleil, J Fernandez-Recio, PA Bates Bioinformatics 29 (6), 807-809, 2013 | 323 | 2013 |
| SKEMPI 2.0: an updated benchmark of changes in protein–protein binding energy, kinetics and thermodynamics upon mutation J Jankauskaitė, B Jiménez-García, J Dapkūnas, J Fernández-Recio, ... Bioinformatics 35 (3), 462-469, 2019 | 318 | 2019 |
| pyDockWEB: a web server for rigid-body protein–protein docking using electrostatics and desolvation scoring B Jiménez-García, C Pons, J Fernández-Recio Bioinformatics 29 (13), 1698-1699, 2013 | 305 | 2013 |
| SKEMPI: a structural kinetic and energetic database of mutant protein interactions and its use in empirical models IH Moal, J Fernández-Recio Bioinformatics 28 (20), 2600-2607, 2012 | 300 | 2012 |
| ICM‐DISCO docking by global energy optimization with fully flexible side‐chains J Fernández‐Recio, M Totrov, R Abagyan Proteins: Structure, Function, and Bioinformatics 52 (1), 113-117, 2003 | 269 | 2003 |
| Soft protein–protein docking in internal coordinates J Fernández‐Recio, M Totrov, R Abagyan Protein Science 11 (2), 280-291, 2002 | 249 | 2002 |
| Optimal docking area: a new method for predicting protein–protein interaction sites J Fernandez‐Recio, M Totrov, C Skorodumov, R Abagyan PROTEINS: Structure, Function, and bioinformatics 58 (1), 134-143, 2005 | 238 | 2005 |
| Polygalacturonase inhibiting proteins: players in plant innate immunity? L Federici, A Di Matteo, J Fernandez-Recio, D Tsernoglou, F Cervone Trends in plant science 11 (2), 65-70, 2006 | 212 | 2006 |
| Assembly and channel opening in a bacterial drug efflux machine VN Bavro, Z Pietras, N Furnham, L Pérez-Cano, J Fernández-Recio, ... Molecular cell 30 (1), 114-121, 2008 | 206 | 2008 |
| FRODOCK: a new approach for fast rotational protein–protein docking JI Garzon, JR Lopéz-Blanco, C Pons, J Kovacs, R Abagyan, ... Bioinformatics 25 (19), 2544-2551, 2009 | 185 | 2009 |
| The Crystal Structure of Fibroblast Growth Factor (FGF) 19 Reveals Novel Features of the FGF Family and Offers a Structural Basis for Its Unusual Receptor Affinity, NJ Harmer, L Pellegrini, D Chirgadze, J Fernandez-Recio, TL Blundell Biochemistry 43 (3), 629-640, 2004 | 185 | 2004 |
| Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 168 | 2016 |
| Community-wide assessment of protein-interface modeling suggests improvements to design methodology SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ... Journal of molecular biology 414 (2), 289-302, 2011 | 158 | 2011 |
| Identification of hot-spot residues in protein-protein interactions by computational docking S Grosdidier, J Fernández-Recio BMC bioinformatics 9, 1-13, 2008 | 143 | 2008 |
| The crystal structure of the outer membrane protein VceC from the bacterial pathogen Vibrio cholerae at 1.8 Å resolution L Federici, D Du, F Walas, H Matsumura, J Fernandez-Recio, ... Journal of Biological Chemistry 280 (15), 15307-15314, 2005 | 139 | 2005 |
| The structure of human 4F2hc ectodomain provides a model for homodimerization and electrostatic interaction with plasma membrane J Fort, LR de la Ballina, HE Burghardt, C Ferrer-Costa, J Turnay, ... Journal of Biological Chemistry 282 (43), 31444-31452, 2007 | 131 | 2007 |
| Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019 | 128 | 2019 |
Iain MoalGlaxoSmithKlineVerified email at gsk.com
