Pengfei Tian

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Robert BestSenior Investigator, National Institutes of HealthVerified email at helix.nih.gov
Wouter BoomsmaProfessor, Department of Computer Science, University of CopenhagenVerified email at di.ku.dk
Kresten Lindorff-LarsenLinderstrøm-Lang Centre for Protein Science, Department of Biology, University of CopenhagenVerified email at bio.ku.dk
Gunnar von HeijneStockholm UniversityVerified email at dbb.su.se
Renuka KudvaNational Genomics Infrastructure - SciLifeLab | STAR Protocols - Cell PressVerified email at scilifelab.se
Jesper Ferkinghoff-BorgAssociate Professor, Research Director, Novo Nordisk A/SVerified email at novonordisk.com
Yong WangZhejiang UniversityVerified email at zju.edu.cn
Jes FrellsenAssociate Professor, Technical University of Denmark (DTU)Verified email at dtu.dk
Thomas HamelryckDpt. of computer science / Dpt. of biology, University of CopenhagenVerified email at bio.ku.dk
Lene B. OddershedeProfessor of Physics, Niels Bohr InstituteVerified email at nbi.dk
Poul Martin BendixAssoc. Professor at Niels Bohr InstituteVerified email at nbi.ku.dk
Mogens H. JensenProfessor of Complex Systems, Niels Bohr InstituteVerified email at nbi.dk
Christian AndreettaUniv. of Copenhagen, Denmark, and Uni Computing, Uni Research, NorwayVerified email at uni.no
Sandro BottaroPeptoneVerified email at peptone.io
Aleix LafitaGSKVerified email at gsk.com
Alex BatemanHead of Protein Sequence Resources, EMBL-EBIVerified email at ebi.ac.uk
Patrick James ShillingCSIRO, Stockholm UniversityVerified email at csiro.au
"Jeff Hollins"OR"Jeffrey J. Hollins"University of CambridgeVerified email at cam.ac.uk
James BaberNIDDK, National Institutes of HealthVerified email at niddk.nih.gov
Anders S. ChristensenQuantum Consulting by ChristensenVerified email at unibas.ch

Pengfei Tian

Principal Scientist, Flagship Labs 97, Inc. (FL97)

Verified email at nih.gov

Protein Design RNA Design Machine Learning Monte Carlo Simulations Molecular Simulations


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Structure of a functional amyloid protein subunit computed using sequence variation P Tian, W Boomsma, Y Wang, DE Otzen, MH Jensen, K Lindorff-Larsen Journal of the American Chemical Society 137 (1), 22-25, 2015	109	2015
The Folding Pathway of an Ig Domain is Conserved On and Off the Ribosome P Tian, A Steward, R Kudva, T Su, PJ Shilling, AA Nickson, JJ Hollins, ... Proceedings of the National Academy of Sciences 115 (48), E11284-E11293, 2018	96	2018
Single particle and PET-based platform for identifying optimal plasmonic nano-heaters for photothermal cancer therapy JT Jørgensen, K Norregaard, P Tian, PM Bendix, A Kjaer, LB Oddershede Scientific Reports 6 (1), 30076, 2016	88	2016
The Shape of the Ribosome Exit Tunnel Affects Cotranslational Protein Folding R Kudva, P Tian, F Pardo-Avila, M Carroni, RB Best, H Bernstein, ... eLife 7, e36326, 2018	81	2018
Co‐evolutionary fitness landscapes for sequence design P Tian, JM Louis, JL Baber, A Aniana, RB Best Angewandte Chemie 130 (20), 5776-5780, 2018	77	2018
A small single-domain protein folds through the same pathway on-and off-the ribosome EJ Guinn, P Tian, M Shin, RB Best, S Marqusee Proceedings of the National Academy of Sciences 115 (48), 12206-12211, 2018	63	2018
Heat generation by irradiated complex composite nanostructures H Ma, P Tian, J Pello, PM Bendix, LB Oddershede Nano letters 14 (2), 612-619, 2014	61	2014
How Many Protein Sequences Fold to a Given Structure? A Coevolutionary Analysis P Tian, RB Best Biophysical Journal 113 (8), 1719-1730, 2017	50	2017
PHAISTOS: A framework for Markov chain Monte Carlo simulation and inference of protein structure W Boomsma, J Frellsen, T Harder, S Bottaro, KE Johansson, P Tian, ... Journal of computational chemistry 34 (19), 1697-1705, 2013	48	2013
The ribosome modulates folding inside the ribosomal exit tunnel F Wruck, P Tian, R Kudva, RB Best, G von Heijne, SJ Tans, A Katranidis Communications biology 4 (1), 523, 2021	44	2021
Structural determinants of misfolding in multidomain proteins P Tian, RB Best PLoS computational biology 12 (5), e1004933, 2016	37	2016
Tandem domain swapping: determinants of multidomain protein misfolding A Lafita, P Tian, RB Best, A Bateman Current Opinion in Structural Biology 58, 97-104, 2019	35	2019
Cotranslational folding cooperativity of contiguous domains of α-spectrin G Kemp, OB Nilsson, P Tian, RB Best, G von Heijne Proceedings of the National Academy of Sciences 117 (25), 14119-14126, 2020	34	2020
Equilibrium simulations of proteins using molecular fragment replacement and NMR chemical shifts W Boomsma, P Tian, J Frellsen, J Ferkinghoff-Borg, T Hamelryck, ... Proceedings of the National Academy of Sciences 111 (38), 13852-13857, 2014	34	2014
Exploring the sequence fitness landscape of a bridge between protein folds P Tian, RB Best PLoS computational biology 16 (10), e1008285, 2020	28	2020
Robust estimation of diffusion-optimized ensembles for enhanced sampling P Tian, S Jónsson, J Ferkinghoff-Borg, S Krivov, K Lindorff-Larsen, ... Biophysical Journal 106 (2), 640a, 2014	12	2014
A Monte Carlo study of the early steps of functional amyloid formation P Tian, K Lindorff-Larsen, W Boomsma, MH Jensen, DE Otzen PloS one 11 (1), e0146096, 2016	11	2016
Formulation of probabilistic models of protein structure in atomic detail using the reference ratio method JB Valentin, C Andreetta, W Boomsma, S Bottaro, J Ferkinghoff‐Borg, ... Proteins: Structure, Function, and Bioinformatics 82 (2), 288-299, 2014	11	2014
Membrane anchoring facilitates colocalization of enzymes in plant cytochrome P450 redox systems T Laursen, HYM Lam, KK Sørensen, P Tian, CC Hansen, JT Groves, ... Communications Biology 4 (1), 1057, 2021	8	2021
TADOSS: computational estimation of tandem domain swap stability A Lafita, P Tian, RB Best, A Bateman Bioinformatics 35 (14), 2507-2508, 2019	8	2019

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