| Methylation QTLs Are Associated with Coordinated Changes in Transcription Factor Binding, Histone Modifications, and Gene Expression Levels NE Banovich, X Lan, G McVicker, B Van de Geijn, JF Degner, JD Blischak, ... PLOS Genetics 10 (9), e1004663, 2014 | 312 | 2014 |
| Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality DF Simola, L Wissler, G Donahue, RM Waterhouse, M Helmkampf, ... Genome research 23 (8), 1235-1247, 2013 | 262 | 2013 |
| Bgee: integrating and comparing heterogeneous transcriptome data among species F Bastian, G Parmentier, J Roux, S Moretti, V Laudet, ... Data Integration in the Life Sciences, 124-131, 2008 | 216 | 2008 |
| The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals FB Bastian, J Roux, A Niknejad, A Comte, SS Fonseca Costa, ... Nucleic Acids Research 49 (D1), D831-D847, 2021 | 172 | 2021 |
| Patterns of positive selection in seven ant genomes J Roux, E Privman, S Moretti, JT Daub, M Robinson-Rechavi, L Keller Molecular biology and evolution 31 (7), 1661-1685, 2014 | 158 | 2014 |
| Developmental constraints on vertebrate genome evolution J Roux, M Robinson-Rechavi PLoS genetics 4 (12), e1000311, 2008 | 140 | 2008 |
| The genomic impact of 100 million years of social evolution in seven ant species J Gadau, M Helmkampf, S Nygaard, J Roux, DF Simola, CR Smith, ... Trends in Genetics, 2011 | 129 | 2011 |
| A comparison of gene expression and DNA methylation patterns across tissues and species LE Blake, J Roux, I Hernando-Herraez, N Banovich, RG Perez, CJ Hsiao, ... Genome Research, gr. 254904.119, 2020 | 115 | 2020 |
| miR-221-3p drives the shift of M2-macrophages to a pro-inflammatory function by suppressing JAK3/STAT3 activation L Quero, AN Tiaden, E Hanser, J Roux, A Laski, J Hall, D Kyburz Frontiers in immunology, 3087, 2020 | 114 | 2020 |
| Long-lived T follicular helper cells retain plasticity and help sustain humoral immunity M Künzli, D Schreiner, TC Pereboom, N Swarnalekha, LC Litzler, ... Science Immunology 5 (45), eaay5552, 2020 | 107 | 2020 |
| What to compare and how: Comparative transcriptomics for Evo‐Devo J Roux, M Rosikiewicz, M Robinson‐Rechavi Journal of Experimental Zoology Part B: Molecular and Developmental …, 2015 | 86 | 2015 |
| Evaluation of tools for long read RNA-seq splice-aware alignment K Križanović, A Echchiki, J Roux, M Šikić Bioinformatics, 2017 | 83 | 2017 |
| Age-dependent gain of alternative splice forms and biased duplication explain the relation between splicing and duplication J Roux, M Robinson-Rechavi Genome Research 21 (3), 357-363, 2011 | 71 | 2011 |
| Comparative analysis of human and mouse expression data illuminates tissue-specific evolutionary patterns of miRNAs J Roux, M Gonzàlez-Porta, M Robinson-Rechavi Nucleic Acids Research 40 (13), 5890-5900, 2012 | 68 | 2012 |
| A Comparative Assessment of Human and Chimpanzee iPSC-derived Cardiomyocytes with Primary Heart Tissues BJ Pavlovic, LE Blake, J Roux, C Chavarria, Y Gilad Scientific Reports 8 (1), 15312, 2018 | 66 | 2018 |
| The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases SIB Swiss Institute of Bioinformatics Members Nucleic acids research 44 (D1), D27-D37, 2015 | 51 | 2015 |
| Molecular signaling in zebrafish development and the vertebrate phylotypic period A Comte, J Roux, M Robinson‐Rechavi Evolution & development 12 (2), 144-156, 2010 | 51 | 2010 |
| Selective constraints on coding sequences of nervous system genes are a major determinant of duplicate gene retention in vertebrates J Roux, J Liu, M Robinson-Rechavi Molecular biology and evolution 34 (11), 2773-2791, 2017 | 47 | 2017 |
| Deletion of SNX9 alleviates CD8 T cell exhaustion for effective cellular cancer immunotherapy MP Trefny, N Kirchhammer, P Auf der Maur, M Natoli, D Schmid, ... Nature Communications 14 (1), 86, 2023 | 39 | 2023 |
| Targeting the Siglec–sialic acid axis promotes antitumor immune responses in preclinical models of glioblastoma P Schmassmann, J Roux, A Buck, N Tatari, S Hogan, J Wang, ... Science Translational Medicine 15 (705), eadf5302, 2023 | 36 | 2023 |
Marc Robinson-RechaviProfessor of Bioinformatics, Department of Ecology and Evolution UNIL, & Group leader SIBVerified email at unil.ch
