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Donald Jacobs
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Cited by
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Protein flexibility predictions using graph theory
DJ Jacobs, AJ Rader, LA Kuhn, MF Thorpe
Proteins: Structure, Function, and Bioinformatics 44 (2), 150-165, 2001
9132001
Principal component analysis: a method for determining the essential dynamics of proteins
CC David, DJ Jacobs
Protein dynamics: Methods and protocols, 193-226, 2014
8462014
Generic rigidity percolation: the pebble game
DJ Jacobs, MF Thorpe
Physical review letters 75 (22), 4051, 1995
5931995
An algorithm for two-dimensional rigidity percolation: the pebble game
DJ Jacobs, B Hendrickson
Journal of Computational Physics 137 (2), 346-365, 1997
4861997
Self-organization in network glasses
MF Thorpe, DJ Jacobs, MV Chubynsky, JC Phillips
Journal of Non-Crystalline Solids 266, 859-866, 2000
3392000
Generic rigidity percolation in two dimensions
DJ Jacobs, MF Thorpe
Physical Review E 53 (4), 3682, 1996
2751996
Protein flexibility and dynamics using constraint theory
MF Thorpe, M Lei, AJ Rader, DJ Jacobs, LA Kuhn
Journal of Molecular Graphics and Modelling 19 (1), 60-69, 2001
1602001
Generic rigidity in three-dimensional bond-bending networks
DJ Jacobs
Journal of Physics A: Mathematical and General 31 (31), 6653, 1998
1351998
A flexible approach for understanding protein stability
DR Livesay, S Dallakyan, GG Wood, DJ Jacobs
FEBS letters 576 (3), 468-476, 2004
952004
Floppy modes and the free energy: Rigidity and connectivity percolation on Bethe lattices
PM Duxbury, DJ Jacobs, MF Thorpe, C Moukarzel
Physical Review E 59 (2), 2084, 1999
911999
Extending the fast multipole method to charges inside or outside a dielectric sphere
W Cai, S Deng, D Jacobs
Journal of Computational Physics 223 (2), 846-864, 2007
882007
Structural rigidity in the capsid assembly of cowpea chlorotic mottle virus
BM Hespenheide, DJ Jacobs, MF Thorpe
Journal of Physics: Condensed Matter 16 (44), S5055, 2004
862004
Flexible and rigid regions in proteins
DJ Jacobs, LA Kuhn, MF Thorpe
Rigidity theory and applications, 357-384, 2002
842002
Network rigidity at finite temperature: relationships between thermodynamic stability, the nonadditivity of entropy, and cooperativity in molecular systems
DJ Jacobs, S Dallakyan, GG Wood, A Heckathorne
Physical Review E 68 (6), 061109, 2003
762003
Anomalous diffusion: a dynamic perspective
R Muralidhar, D Ramkrishna, H Nakanishi, D Jacobs
Physica A: Statistical Mechanics and its Applications 167 (2), 539-559, 1990
731990
Conserved quantitative stability/flexibility relationships (QSFR) in an orthologous RNase H pair
DR Livesay, DJ Jacobs
Proteins: Structure, Function, and Bioinformatics 62 (1), 130-143, 2006
712006
Elucidating protein thermodynamics from the three-dimensional structure of the native state using network rigidity
DJ Jacobs, S Dallakyan
Biophysical journal 88 (2), 903-915, 2005
692005
Protein dynamics
CC David, DJ Jacobs, DR Livesay
Springer, 2014
662014
Generic rigidity of network glasses
MF Thorpe, DJ Jacobs, NV Chubynsky, AJ Rader
Rigidity theory and applications, 239-277, 2002
622002
Hydrogen bond networks determine emergent mechanical and thermodynamic properties across a protein family
DR Livesay, DH Huynh, S Dallakyan, DJ Jacobs
Chemistry Central Journal 2, 1-20, 2008
602008
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Articles 1–20