| Reagent and laboratory contamination can critically impact sequence-based microbiome analyses SJ Salter, MJ Cox, EM Turek, ST Calus, WO Cookson, MF Moffatt, ... BMC biology 12, 1-12, 2014 | 3260 | 2014 |
| Dense genomic sampling identifies highways of pneumococcal recombination C Chewapreecha, SR Harris, NJ Croucher, C Turner, P Marttinen, ... Nature genetics 46 (3), 305-309, 2014 | 420 | 2014 |
| Recognizing the reagent microbiome MC de Goffau, S Lager, SJ Salter, J Wagner, A Kronbichler, ... Nature microbiology 3 (8), 851-853, 2018 | 295 | 2018 |
| Comprehensive identification of single nucleotide polymorphisms associated with beta-lactam resistance within pneumococcal mosaic genes C Chewapreecha, P Marttinen, NJ Croucher, SJ Salter, SR Harris, ... PLoS genetics 10 (8), e1004547, 2014 | 237 | 2014 |
| Patent Human Infections with the Whipworm, Trichuris trichiura, Are Not Associated with Alterations in the Faecal Microbiota P Cooper, AW Walker, J Reyes, M Chico, SJ Salter, M Vaca, J Parkhill PLoS ONE 8 (10), e76573, 2013 | 216 | 2013 |
| Freshwater monitoring by nanopore sequencing L Urban, A Holzer, JJ Baronas, MB Hall, P Braeuninger-Weimer, ... elife 10, e61504, 2021 | 119 | 2021 |
| Variation at the capsule locus, cps, of mistyped and non-typable Streptococcus pneumoniae isolates SJ Salter, J Hinds, KA Gould, L Lambertsen, WP Hanage, M Antonio, ... Microbiology 158 (6), 1560-1569, 2012 | 97 | 2012 |
| Dominant Role of Nucleotide Substitution in the Diversification of Serotype 3 Pneumococci over Decades and during a Single Infection NJ Croucher, AM Mitchell, KA Gould, D Inverarity, L Barquist, T Feltwell, ... PLoS Genetics 9 (10), e1003868, 2013 | 93 | 2013 |
| Ten millennia of hepatitis B virus evolution A Kocher, L Papac, R Barquera, FM Key, MA Spyrou, R Hübler, ... Science 374 (6564), 182-188, 2021 | 89 | 2021 |
| Pneumococcal Capsule Synthesis Locus cps as Evolutionary Hotspot with Potential to Generate Novel Serotypes by Recombination RJ Mostowy, NJ Croucher, N De Maio, C Chewapreecha, SJ Salter, ... Molecular biology and evolution 34 (10), 2537-2554, 2017 | 76 | 2017 |
| Reagent and laboratory contamination can critically impact sequence-based microbiome analysis SJ Salter, MJ Cox, EM Turek, ST Calus, WO Cookson, MF Moffatt, ... BMC Biol 12 (87), 10.1186, 2014 | 76 | 2014 |
| A longitudinal study of the infant nasopharyngeal microbiota: the effects of age, illness and antibiotic use in a cohort of South East Asian children SJ Salter, C Turner, W Watthanaworawit, MC de Goffau, J Wagner, ... PLoS neglected tropical diseases 11 (10), e0005975, 2017 | 64 | 2017 |
| Global Phylogenomic Analysis of Nonencapsulated Streptococcus pneumoniae Reveals a Deep-Branching Classic Lineage That Is Distinct from Multiple Sporadic … M Hilty, D Wüthrich, SJ Salter, H Engel, S Campbell, R Sá-Leão, ... Genome biology and evolution 6 (12), 3281-3294, 2014 | 58 | 2014 |
| Pneumococcal within-host diversity during colonization, transmission and treatment G Tonkin-Hill, C Ling, C Chaguza, SJ Salter, P Hinfonthong, E Nikolaou, ... Nature Microbiology 7 (11), 1791-1804, 2022 | 54 | 2022 |
| Genetic stabilization of the drug-resistant PMEN1 pneumococcus lineage by its distinctive DpnIII restriction-modification system RA Eutsey, E Powell, J Dordel, SJ Salter, TA Clark, J Korlach, GD Ehrlich, ... MBio 6 (3), 10.1128/mbio. 00173-15, 2015 | 27 | 2015 |
| The food-borne identity SJ Salter Nature reviews microbiology 12 (8), 533-533, 2014 | 24 | 2014 |
| 'Candidatus Ornithobacterium hominis': insights gained from draft genomes obtained from nasopharyngeal swabs SJ Salter, P Scott, AJ Page, A Tracey, MC de Goffau, C Cormie, ... Microbial Genomics 5 (2), e000247, 2019 | 15 | 2019 |
| Diverse recruitment to a taxonomically structured global atmospheric microbiota S Archer, K Lee, T Caruso, M Leung, X Tong, SJ Salter, G Hinchliffe, ... Res. Square 10, 2021 | 12 | 2021 |
| Attack of the clones S Baldry Nature Reviews Microbiology 8 (6), 390-390, 2010 | 11 | 2010 |
| The Human Blood Fluke, Schistosoma mansoni, Harbors Bacteria Throughout the Parasite's Life Cycle F Formenti, A Cortés, M Deiana, S Salter, J Parkhill, M Berriman, ... The Journal of infectious diseases 228 (9), 1299-1303, 2023 | 9 | 2023 |
Julian ParkhillUniversity of CambridgeVerified email at cam.ac.uk
