| CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structures E Chovancova, A Pavelka, P Benes, O Strnad, J Brezovsky, B Kozlikova, ... Public Library of Science 8 (10), e1002708, 2012 | 1248 | 2012 |
| CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories A Jurcik, D Bednar, J Byska, SM Marques, K Furmanova, L Daniel, ... Bioinformatics 34 (20), 3586-3588, 2018 | 324 | 2018 |
| CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures B Kozlikova, E Sebestova, V Sustr, J Brezovsky, O Strnad, L Daniel, ... Bioinformatics 30 (18), 2684-2685, 2014 | 168 | 2014 |
| Modeling in the Time of COVID-19: Statistical and Rule-based Mesoscale Models N Nguyen, O Strnad, T Klein, D Luo, R Alharbi, P Wonka, M Maritan, ... IEEE transactions on visualization and computer graphics 27 (2), 722-732, 2020 | 53 | 2020 |
| Molecumentary: Adaptable narrated documentaries using molecular visualization D Kouřil, O Strnad, P Mindek, S Halladjian, T Isenberg, ME Gröller, I Viola IEEE Transactions on Visualization and Computer Graphics 29 (3), 1733-1747, 2021 | 30 | 2021 |
| Nanotilus: Generator of immersive guided-tours in crowded 3d environments R Alharbi, O Strnad, LR Luidolt, M Waldner, D Kouřil, C Bohak, T Klein, ... IEEE Transactions on Visualization and Computer Graphics 29 (3), 1860-1875, 2021 | 14 | 2021 |
| Finding nano-Ötzi: cryo-electron tomography visualization guided by learned segmentation N Nguyen, C Bohak, D Engel, P Mindek, O Strnad, P Wonka, S Li, ... IEEE Transactions on Visualization and Computer Graphics 29 (10), 4198-4214, 2022 | 11* | 2022 |
| CAVER 2.1 P Beneš, B Kozlíková, O Strnad, V Šustr, E Chovancová, A Pavelka, ... | 9 | 2010 |
| Real-time visualization and exploration of protein empty space with varying parameters O Strnad, B Kozlıková, V Šustr, J Sochor International Journal on Advances in Life Sciences 5 (3), 2013 | 6* | 2013 |
| New path planning method for computation of constrained dynamic channels in proteins P Beneš, O Strnad, J Sochor Václav Skala-UNION Agency, 2011 | 6 | 2011 |
| Computation of dynamic channels in proteins P Beneš, P Medek, O Strnad, J Sochor Proceedings of Biotechno, U. o. S. Pei-Yuan Qian, KAUST and HK Technology …, 2011 | 5 | 2011 |
| VOICE: Visual Oracle for Interaction, Conversation, and Explanation D Jia, A Irger, L Besancon, O Strnad, D Luo, J Bjorklund, A Ynnerman, ... arXiv preprint arXiv:2304.04083, 2023 | 3 | 2023 |
| Visualizing Movements of Protein Tunnels in Molecular Dynamics Simulations. B Kozlíková, A Jurcík, J Byska, O Strnad, J Sochor VCBM, 97-106, 2014 | 3 | 2014 |
| Algorithms for Detecting Pathways in Large Protein Structures and Their Ensembles O Strnad PhD thesis. Masaryk Univer sity, 2014 | 3 | 2014 |
| SpyDirect: a novel biofunctionalization method for high stability and longevity of electronic biosensors K Guo, R Grünberg, Y Ren, T Chang, S Wustoni, O Strnad, A Koklu, ... Advanced Science 11 (27), 2306716, 2024 | 2 | 2024 |
| Detection of intramolecular tunnels connecting sequence of sites in protein structures O Strnad, B Kozlikova, J Sochor 8th International Conference on Practical Applications of Computational …, 2014 | 2* | 2014 |
| Nanouniverse: Virtual Instancing of Structural Detail and Adaptive Shell Mapping R Alharbi, O Strnad, M Hadwiger, I Viola arXiv preprint arXiv:2404.05116, 2024 | 1 | 2024 |
| Volume conductor: interactive visibility management for crowded volumes Ž Lesar, R Alharbi, C Bohak, O Strnad, C Heinzl, M Marolt, I Viola The visual computer 40 (2), 1005-1020, 2024 | 1 | 2024 |
| Synopset: multiscale visual abstraction set for explanatory analysis of dna nanotechnology simulations D Luo, A Kouyoumdjian, O Strnad, H Miao, I Barišić, I Viola arXiv preprint arXiv:2205.01628, 2022 | 1 | 2022 |
| CAVER 3.0 E Chovancová, A Pavelka, P Beneš, O Strnad, J Brezovský, B Kozlíková, ... | 1 | 2011 |
