| High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries C Jain, LM Rodriguez-R, AM Phillippy, KT Konstantinidis, S Aluru Nature communications 9 (1), 5114, 2018 | 3945 | 2018 |
| The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... Science 376 (6588), 44-53, 2022 | 2646 | 2022 |
| Critical Assessment of Metagenome Interpretation- a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017 | 822 | 2017 |
| The structure, function and evolution of a complete human chromosome 8 GA Logsdon, MR Vollger, PH Hsieh, Y Mao, MA Liskovykh, S Koren, ... Nature 593 (7857), 101--107, 2021 | 305 | 2021 |
| Weighted minimizer sampling improves long read mapping C Jain, A Rhie, H Zhang, C Chu, S Koren, A Phillippy Bioinformatics (ISMB), i111–i118, 2020 | 192 | 2020 |
| Long-read mapping to repetitive reference sequences using Winnowmap2 C Jain, A Rhie, NF Hansen, S Koren, AM Phillippy Nature Methods 19 (6), 705-710, 2022 | 166 | 2022 |
| A comprehensive evaluation of long read error correction methods H Zhang, C Jain, S Aluru BMC genomics 21, 1-15, 2020 | 163 | 2020 |
| A Fast Adaptive Algorithm for Computing Whole-Genome Homology Maps C Jain, S Koren, A Dilthey, A Phillippy, S Aluru Bioinformatics (ECCB) 34 (17), i748–i756, 2018 | 162 | 2018 |
| PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions ND Olson, J Wagner, J McDaniel, SH Stephens, ST Westreich, ... Cell genomics 2 (5), 2022 | 158 | 2022 |
| Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps AT Dilthey, C Jain, S Koren, AM Phillippy Nature communications 10 (1), 1-12, 2019 | 157 | 2019 |
| A fast approximate algorithm for mapping long reads to large reference databases C Jain, A Dilthey, S Koren, S Aluru, AM Phillippy International Conference on Research in Computational Molecular Biology (RECOMB), 2017 | 135 | 2017 |
| Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies AM Mc Cartney, K Shafin, M Alonge, AV Bzikadze, G Formenti, ... Nature methods 19 (6), 687-695, 2022 | 86 | 2022 |
| Reply to:“Re-evaluating the evidence for a universal genetic boundary among microbial species” LM Rodriguez-R, C Jain, RE Conrad, S Aluru, KT Konstantinidis Nature communications 12 (1), 4060, 2021 | 78 | 2021 |
| On the complexity of sequence-to-graph alignment C Jain*, H Zhang*, Y Gao, S Aluru Journal of Computational Biology (RECOMB special issue), 2020 | 69 | 2020 |
| Real-time mapping of nanopore raw signals H Zhang, H Li, C Jain, H Cheng, KF Au, H Li, S Aluru Bioinformatics (ISMB), i477-i483, 2021 | 65 | 2021 |
| Accelerating minimap2 for long-read sequencing applications on modern CPUs S Kalikar, C Jain, M Vasimuddin, S Misra Nature Computational Science 2 (2), 78-83, 2022 | 58 | 2022 |
| Accelerating sequence alignment to graphs C Jain, S Misra, H Zhang, A Dilthey, S Aluru 2019 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2019 | 50 | 2019 |
| Kmerind: A flexible parallel library for k-mer indexing of biological sequences on distributed memory systems T Pan, P Flick, C Jain, Y Liu, S Aluru Proceedings of the 7th ACM international conference on bioinformatics …, 2016 | 42 | 2016 |
| An Adaptive Parallel Algorithm for Computing Connected Components C Jain, P Flick, T Pan, O Green, S Aluru IEEE Transactions on Parallel and Distributed Systems, 2017 | 38 | 2017 |
| A parallel connectivity algorithm for de Bruijn graphs in metagenomic applications P Flick, C Jain, T Pan, S Aluru SC'15: Proceedings of the International Conference for High Performance …, 2015 | 34 | 2015 |
Srinivas AluruRegents' Professor and Senior Associate Dean, College of Computing, Georgia TechVerified email at cc.gatech.edu
