Nozomi Nagano
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One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions
N Nagano, CA Orengo, JM Thornton
Journal of molecular biology 321 (5), 741-765, 2002
Strong hydrophobic nature of cysteine residues in proteins
N Nagano, M Ota, K Nishikawa
FEBS letters 458 (1), 69-71, 1999
Characterization of the biosynthetic gene cluster for the ribosomally synthesized cyclic peptide ustiloxin B in Aspergillus flavus
M Umemura, N Nagano, H Koike, J Kawano, T Ishii, Y Miyamura, ...
Fungal Genetics and Biology 68, 23-30, 2014
Motif-based searching in TOPS protein topology databases.
D Gilbert, D Westhead, N Nagano, J Thornton
Bioinformatics (Oxford, England) 15 (4), 317-326, 1999
MIDDAS-M: motif-independent de novo detection of secondary metabolite gene clusters through the integration of genome sequencing and transcriptome data
M Umemura, H Koike, N Nagano, T Ishii, J Kawano, N Yamane, I Kozone, ...
PloS one 8 (12), e84028, 2013
Barrel structures in proteins: automatic identification and classification including a sequence analysis of TIM barrels
N Nagano, EG Hutchinson, JM Thornton
Protein Science 8 (10), 2072-2084, 1999
Class of cyclic ribosomal peptide synthetic genes in filamentous fungi
N Nagano, M Umemura, M Izumikawa, J Kawano, T Ishii, M Kikuchi, ...
Fungal Genetics and Biology 86, 58-70, 2016
Unveiling the biosynthetic pathway of the ribosomally synthesized and post‐translationally modified peptide ustiloxin B in filamentous fungi
Y Ye, A Minami, Y Igarashi, M Izumikawa, M Umemura, N Nagano, ...
Angewandte Chemie 128 (28), 8204-8207, 2016
EzCatDB: the enzyme catalytic-mechanism database
N Nagano
Nucleic acids research 33 (suppl_1), D407-D412, 2005
Ustiloxins, fungal cyclic peptides, are ribosomally synthesized in Ustilaginoidea virens
T Tsukui, N Nagano, M Umemura, T Kumagai, G Terai, M Machida, K Asai
Bioinformatics 31 (7), 981-985, 2015
The (βα)8 glycosidases: sequence and structure analyses suggest distant evolutionary relationships
N Nagano, CT Porter, JM Thornton
Protein Engineering 14 (11), 845-855, 2001
Prediction of detailed enzyme functions and identification of specificity determining residues by random forests
C Nagao, N Nagano, K Mizuguchi
PloS one 9 (1), e84623, 2014
Metric learning for enzyme active-site search
T Kato, N Nagano
Bioinformatics 26 (21), 2698-2704, 2010
Expression of ustR and the Golgi protease KexB are required for ustiloxin B biosynthesis in Aspergillus oryzae
A Yoshimi, M Umemura, N Nagano, H Koike, M Machida, K Abe
AMB Express 6, 1-8, 2016
EzCatDB: the enzyme reaction database, 2015 update
N Nagano, N Nakayama, K Ikeda, M Fukuie, K Yokota, T Doi, T Kato, ...
Nucleic acids research 43 (D1), D453-D458, 2015
Systematic comparison of catalytic mechanisms of hydrolysis and transfer reactions classified in the EzCatDB database
N Nagano, T Noguchi, Y Akiyama
Proteins: Structure, Function, and Bioinformatics 66 (1), 147-159, 2007
Key challenges for the creation and maintenance of specialist protein resources
GL Holliday, A Bairoch, PG Bagos, A Chatonnet, DJ Craik, RD Finn, ...
Proteins: Structure, Function, and Bioinformatics 83 (6), 1005-1013, 2015
SAHG, a comprehensive database of predicted structures of all human proteins
C Motono, J Nakata, R Koike, K Shimizu, M Shirota, T Amemiya, K Tomii, ...
Nucleic acids research 39 (suppl_1), D487-D493, 2011
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat
PC Babbitt, PG Bagos, A Bairoch, A Bateman, A Chatonnet, MJ Chen, ...
Database 2015, bav063, 2015
Systematic analyses of P-loop containing nucleotide triphosphate hydrolase superfamily based on sequence, structure and function
Y Kawamura, K Asai, S Ishii, N Nagano
Genome Informatics 14, 581-582, 2003
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