Andrew E. Allen
Andrew E. Allen
J. Craig Venter Institute, Scripps Insitutuon of Oceanography (UCSD)
Verified email at - Homepage
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The Genome of the Diatom Thalassiosira Pseudonana: Ecology, Evolution, and Metabolism
EV Armbrust, JA Berges, C Bowler, BR Green, D Martinez, NH Putnam, ...
Science 306 (5693), 79-86, 2004
The Phaeodactylum genome reveals the evolutionary history of diatom genomes
C Bowler, AE Allen, JH Badger, J Grimwood, K Jabbari, A Kuo, ...
Nature 456 (7219), 239-244, 2008
The Ectocarpus genome and the independent evolution of multicellularity in brown algae
JM Cock, L Sterck, P Rouzé, D Scornet, AE Allen, G Amoutzias, ...
Nature 465 (7298), 617-621, 2010
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas
AZ Worden, JH Lee, T Mock, P Rouzé, MP Simmons, AL Aerts, AE Allen, ...
Science 324 (5924), 268-272, 2009
Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions
JE Loper, KA Hassan, DV Mavrodi, EW Davis, CK Lim, BT Shaffer, ...
PLoS genetics 8 (7), e1002784, 2012
Evolution and metabolic significance of the urea cycle in photosynthetic diatoms
AE Allen, CL Dupont, M Oborník, A Horák, A Nunes-Nesi, JP McCrow, ...
Nature 473 (7346), 203-207, 2011
Pan genome of the phytoplankton Emiliania underpins its global distribution
Nature 499 (7457), 209-213, 2013
Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation
AE Allen, J LaRoche, U Maheswari, M Lommer, N Schauer, PJ Lopez, ...
Proceedings of the National Academy of Sciences 105 (30), 10438-10443, 2008
Efficiency of the CO2-concentrating mechanism of diatoms
BM Hopkinson, CL Dupont, AE Allen, FMM Morel
Proceedings of the National Academy of Sciences 108 (10), 3830-3837, 2011
Molecular toolbox for studying diatom biology in Phaeodactylum tricornutum
M Siaut, M Heijde, M Mangogna, A Montsant, S Coesel, A Allen, ...
Gene 406 (1), 23-35, 2007
Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus
T Mock, RP Otillar, J Strauss, M McMullan, P Paajanen, J Schmutz, ...
Nature 541 (7638), 536-540, 2017
Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre
RS Poretsky, I Hewson, S Sun, AE Allen, JP Zehr, MA Moran
Environmental microbiology 11 (6), 1358-1375, 2009
Comparative metatranscriptomics identifies molecular bases for the physiological responses of phytoplankton to varying iron availability
A Marchetti, DM Schruth, CA Durkin, MS Parker, RB Kodner, ...
Proceedings of the National Academy of Sciences 109 (6), E317-E325, 2012
Designer diatom episomes delivered by bacterial conjugation
BJ Karas, RE Diner, SC Lefebvre, J McQuaid, APR Phillips, CM Noddings, ...
Nature communications 6 (1), 6925, 2015
Genomic and functional adaptation in surface ocean planktonic prokaryotes
S Yooseph, KH Nealson, DB Rusch, JP McCrow, CL Dupont, M Kim, ...
Nature 468 (7320), 60-66, 2010
Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton
ML Cuvelier, AE Allen, A Monier, JP McCrow, M Messié, SG Tringe, ...
Proceedings of the National Academy of Sciences 107 (33), 14679-14684, 2010
Prospects in diatom research
PJ Lopez, J Descles, AE Allen, C Bowler
Current opinion in Biotechnology 16 (2), 180-186, 2005
Copper‐dependent iron transport in coastal and oceanic diatoms
MT Maldonado, AE Allen, JS Chong, K Lin, D Leus, N Karpenko, ...
Limnology and oceanography 51 (4), 1729-1743, 2006
Oceanographic and biogeochemical insights from diatom genomes
C Bowler, A Vardi, AE Allen
Annual review of marine science 2 (1), 333-365, 2010
Global biogeography of SAR11 marine bacteria
MV Brown, FM Lauro, MZ DeMaere, L Muir, D Wilkins, T Thomas, ...
Molecular systems biology 8 (1), 595, 2012
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