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Dominik Budday
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Year
Mix-and-inject XFEL crystallography reveals gated conformational dynamics during enzyme catalysis
M Dasgupta, D Budday, SHP De Oliveira, P Madzelan, ...
Proceedings of the National Academy of Sciences 116 (51), 25634-25640, 2019
622019
Geometric analysis characterizes molecular rigidity in generic and non-generic protein configurations
D Budday, S Leyendecker, H van den Bedem
Journal of the Mechanics and Physics of Solids 83, 36-47, 2015
252015
Memory-based meso-scale modeling of Covid-19: County-resolved timelines in Germany
A Kerga▀ner, C Burkhardt, D Lippold, M Kerga▀ner, L Pflug, D Budday, ...
Computational mechanics 66, 1069-1079, 2020
202020
Meso-scale modeling of COVID-19 spatio-temporal outbreak dynamics in Germany
A Kerga▀ner, C Burkhardt, D Lippold, S Nistler, M Kerga▀ner, ...
MedRxiv, 2020.06. 10.20126771, 2020
172020
Kinematic flexibility analysis: Hydrogen bonding patterns impart a spatial hierarchy of protein motion
D Budday, S Leyendecker, H Van Den Bedem
Journal of chemical information and modeling 58 (10), 2108-2122, 2018
142018
Frustration‐guided motion planning reveals conformational transitions in proteins
D Budday, R Fonseca, S Leyendecker, H van den Bedem
Proteins: Structure, Function, and Bioinformatics 85 (10), 1795-1807, 2017
122017
Spatiotemporal modeling of first and second wave outbreak dynamics of COVID-19 in Germany
D Lippold, A Kerga▀ner, C Burkhardt, M Kerga▀ner, J Loos, S Nistler, ...
Biomechanics and modeling in mechanobiology, 1-15, 2021
112021
Collision‐free poisson motion planning in ultra high‐dimensional molecular conformation spaces
R Fonseca, D Budday, H van den Bedem
Journal of Computational Chemistry 39 (12), 711-720, 2018
112018
Fast, clash-free RNA conformational morphing using molecular junctions
A HÚliou, D Budday, R Fonseca, H van den Bedem
Bioinformatics 33 (14), 2114-2122, 2017
92017
Stability and robustness of a 3D SLIP model for walking using lateral leg placement control
D Budday, F Bauer, J Seipel
International Design Engineering Technical Conferences and Computers andá…, 2012
62012
Cysteine modification can gate non-equilibrium conformational dynamics during enzyme catalysis
M DasGupta, D Budday, P Madzelan, J Seravalli, B Hayes, RG Sierra, ...
bioRxiv, 524751, 2019
32019
Safe operation of a multi-axis kinematic system
M Walter, D Budday, M Le, S Burmeister, A Stein
US Patent App. 17/691,568, 2022
12022
High-Dimensional Robotics at the Nanoscale–Kino-Geometric Modeling of Proteins and Molecular Mechanisms
D Budday
12019
Safe operation of a multi-axis kinematic system
M Walter, D Budday, M Le, A Stein, S Burmeister
US Patent 11,927,936, 2024
2024
Projecting safety-related monitoring for a multi-axis kinematic system with multiple movable segments
D Budday, M Walter
US Patent App. 18/097,628, 2023
2023
Meso-scale modeling of COVID-19 spatio-temporal outbreak dynamics in Germany (preprint)
A Kergassner, C Burkhardt, D Lippold, S Nistler, M Kergassner, ...
2020
Kino‐Geometric Modeling: Insights into Protein Molecular Mechanisms
D Budday, S Leyendecker, H van den Bedem
PAMM 19 (1), e201900448, 2019
2019
Bridging protein rigidity theory and normal modes using kino‐geometric analysis with hierarchical constraint relaxation
D Budday, S Leyendecker, H van den Bedem
PAMM 18 (1), e201800251, 2018
2018
A geometric approach to characterize rigidity in proteins
D Budday, S Leyendecker, H van den Bedem
PAMM 15 (1), 89-90, 2015
2015
Transitions In Proteins
D Budday, R Fonseca, S Leyendecker, H van den Bedem
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Articles 1–20