Nicholas J Loman

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Joshua QuickUKRI Future Leaders Fellow, University of BirminghamVerified email at bham.ac.uk
Mark PallenUniversity of East Anglia and Quadram InstituteVerified email at quadram.ac.uk
Christopher QuinceEarlham InstituteVerified email at earlham.ac.uk
Jared SimpsonOntario Institute for Cancer ResearchVerified email at oicr.on.ca
Alan WalkerProfessor, Rowett Institute, University of AberdeenVerified email at abdn.ac.uk
Michael J CoxLecturer, Institute of Microbiology and Infection, University of BirminghamVerified email at bham.ac.uk
Konstantinos GerasimidisProfessor of Clinical NutritionVerified email at glasgow.ac.uk
Susannah Jane SalterUniversity of CambridgeVerified email at cam.ac.uk
Julian ParkhillUniversity of CambridgeVerified email at cam.ac.uk
Melanie SchirmerTechnical University of MunichVerified email at tum.de
Tim DallmanUniversity of UtrechtVerified email at uu.nl
Gurdyal BesraBardrick Professor of Microbial Physiology & ChemistryVerified email at bham.ac.uk
Leo LahtiDepartment of Computing, University of Turku, FinlandVerified email at utu.fi
Aaron QuinlanProfessor of Human Genetics, U. of Utah; https://github.com/arq5x/vitae/raw/master/quinlan.cv.pdfVerified email at genetics.utah.edu
John WainQuadram Institute BiosciencesVerified email at jidc.org
Anders F. AnderssonProfessor in Metagenomics, Science for Life Laboratory, KTH Royal Institute of TechnologyVerified email at scilifelab.se
Johannes AlnebergPhD Student, KTH Royal Institute of Technology, Science for Life Laboratory, School of Biotechnology, Division of Gene TechnologVerified email at scilifelab.se
Charles W PennProfessor of Molecular Microbiology, University of BirminghamVerified email at bham.ac.uk
Mark WebberQuadram InstituteVerified email at quadram.ac.uk
Craig WinstanleyUniversity of LiverpoolVerified email at liv.ac.uk

Nicholas J Loman

Professor of Microbial Genomics and Bioinformatics, University of Birmingham

Verified email at bham.ac.uk - Homepage

Bioinformatics Genomics Microbiology High-throughput Sequencing Molecular Biology


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Reagent and laboratory contamination can critically impact sequence-based microbiome analyses SJ Salter, MJ Cox, EM Turek, ST Calus, WO Cookson, MF Moffatt, ... BMC biology 12, 1-12, 2014	3269	2014
Binning metagenomic contigs by coverage and composition J Alneberg, BS Bjarnason, I De Bruijn, M Schirmer, J Quick, UZ Ijaz, ... Nature methods 11 (11), 1144-1146, 2014	2384	2014
Nanopore sequencing and assembly of a human genome with ultra-long reads M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ... Nature biotechnology 36 (4), 338-345, 2018	2057	2018
Shotgun metagenomics, from sampling to analysis C Quince, AW Walker, JT Simpson, NJ Loman, N Segata Nature biotechnology 35 (9), 833-844, 2017	1953	2017
Performance comparison of benchtop high-throughput sequencing platforms NJ Loman, RV Misra, TJ Dallman, C Constantinidou, SE Gharbia, J Wain, ... Nature biotechnology 30 (5), 434-439, 2012	1772	2012
Genomics and epidemiology of the P. 1 SARS-CoV-2 lineage in Manaus, Brazil NR Faria, TA Mellan, C Whittaker, IM Claro, DS Candido, S Mishra, ... Science 372 (6544), 815-821, 2021	1717	2021
Real-time, portable genome sequencing for Ebola surveillance J Quick, NJ Loman, S Duraffour, JT Simpson, E Severi, L Cowley, JA Bore, ... Nature 530 (7589), 228-232, 2016	1615	2016
A complete bacterial genome assembled de novo using only nanopore sequencing data NJ Loman, J Quick, JT Simpson Nature methods 12 (8), 733-735, 2015	1426	2015
Assessing transmissibility of SARS-CoV-2 lineage B. 1.1. 7 in England E Volz, S Mishra, M Chand, JC Barrett, R Johnson, L Geidelberg, ... Nature 593 (7858), 266-269, 2021	1259	2021
Evaluating the effects of SARS-CoV-2 spike mutation D614G on transmissibility and pathogenicity E Volz, V Hill, JT McCrone, A Price, D Jorgensen, Á O’Toole, J Southgate, ... Cell 184 (1), 64-75. e11, 2021	1180	2021
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples J Quick, ND Grubaugh, ST Pullan, IM Claro, AD Smith, K Gangavarapu, ... Nature protocols 12 (6), 1261-1276, 2017	1178	2017
An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar ND Grubaugh, K Gangavarapu, J Quick, NL Matteson, JG De Jesus, ... Genome biology 20, 1-19, 2019	947	2019
Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B. 1.617. 2) compared with alpha (B. 1.1. 7) variants of concern: a cohort study KA Twohig, T Nyberg, A Zaidi, S Thelwall, MA Sinnathamby, S Aliabadi, ... The Lancet Infectious Diseases 22 (1), 35-42, 2022	944	2022
Preliminary genomic characterisation of an emergent SARS-CoV-2 lineage in the UK defined by a novel set of spike mutations R Andrew virological, 2020	827	2020
Telomere-to-telomere assembly of a complete human X chromosome KH Miga, S Koren, A Rhie, MR Vollger, A Gershman, A Bzikadze, ... Nature 585 (7823), 79-84, 2020	769	2020
Towards a genomics-informed, real-time, global pathogen surveillance system JL Gardy, NJ Loman Nature Reviews Genetics 19 (1), 9-20, 2018	715	2018
Evolution and epidemic spread of SARS-CoV-2 in Brazil DS Candido, IM Claro, JG De Jesus, WM Souza, FRR Moreira, ... Science 369 (6508), 1255-1260, 2020	704	2020
Nanopore native RNA sequencing of a human poly (A) transcriptome RE Workman, AD Tang, PS Tang, M Jain, JR Tyson, R Razaghi, ... Nature methods 16 (12), 1297-1305, 2019	674	2019
Nanopore native RNA sequencing of a human poly (A) transcriptome RE Workman, A Tang, PS Tang, M Jain, JR Tyson, PC Zuzarte, ... BioRxiv, 459529, 2018	674	2018
Establishment and cryptic transmission of Zika virus in Brazil and the Americas NR Faria, J Quick, IM Claro, J Theze, JG de Jesus, M Giovanetti, ... Nature 546 (7658), 406-410, 2017	665	2017

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