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| Major impacts of widespread structural variation on gene expression and crop improvement in tomato M Alonge, X Wang, M Benoit, S Soyk, L Pereira, L Zhang, H Suresh, ... Cell 182 (1), 145-161. e23, 2020 | 603 | 2020 |
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| Paragraph: a graph-based structural variant genotyper for short-read sequence data S Chen, P Krusche, E Dolzhenko, RM Sherman, R Petrovski, ... Genome biology 20, 1-13, 2019 | 151 | 2019 |
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| Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing S Aganezov, S Goodwin, RM Sherman, FJ Sedlazeck, G Arun, S Bhatia, ... Genome research 30 (9), 1258-1273, 2020 | 98 | 2020 |
| Automated assembly scaffolding elevates a new tomato system for high-throughput genome editing M Alonge, L Lebeigle, M Kirsche, S Aganezov, X Wang, ZB Lippman, ... BioRxiv, 2021.11. 18.469135, 2021 | 96 | 2021 |
| A diploid assembly-based benchmark for variants in the major histocompatibility complex CS Chin, J Wagner, Q Zeng, E Garrison, S Garg, A Fungtammasan, ... Nature communications 11 (1), 4794, 2020 | 62 | 2020 |
| Jasmine and Iris: population-scale structural variant comparison and analysis M Kirsche, G Prabhu, R Sherman, B Ni, A Battle, S Aganezov, MC Schatz Nature methods 20 (3), 408-417, 2023 | 51 | 2023 |
| Genomic diversity of SARS-CoV-2 during early introduction into the Baltimore–Washington metropolitan area PM Thielen, S Wohl, T Mehoke, S Ramakrishnan, M Kirsche, ... JCI insight 6 (6), 2021 | 33 | 2021 |
| The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models J Rozowsky, J Gao, B Borsari, YT Yang, T Galeev, G Gürsoy, CB Epstein, ... Cell 186 (7), 1493-1511. e40, 2023 | 31 | 2023 |
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| Sapling: accelerating suffix array queries with learned data models M Kirsche, A Das, MC Schatz Bioinformatics 37 (6), 744-749, 2021 | 23 | 2021 |
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| The human reference genome is finally complete DC Soto, M Kirsche, SM Yan, S Zarate TheScienceBreaker 9 (3), 2023 | | 2023 |
