Vincent J. Lynch

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Gunter WagnerProfessor Emeritus of Ecology and Evolutionary Biology, Yale UniversityVerified email at yale.edu
Kathryn BrayerUniversity of New Mexico Comprehensive Cancer Center, Yale University, University of CaliforniaVerified email at salud.unm.edu
Deena EmeraCenter for Healthy Aging in Women, Buck InstituteVerified email at buckinstitute.org
Mauris NnamaniAssociate Research ScientistVerified email at yale.edu
Cedric FeschotteProfessor, Department of Molecular Biology and Genetics, Cornell UniversityVerified email at cornell.edu
Gemma E MayCarnegie Mellon UniversityVerified email at andrew.cmu.edu
Peter F StadlerProfessor of Bioinformatics, Univ. LeipzigVerified email at bioinf.uni-leipzig.de
Webb MillerPenn State University, UC Santa Barbara, ArizonaVerified email at bx.psu.edu
Guillaume BourqueProfessor, Human Genetics, McGill UniversityVerified email at mcgill.ca
Zev N KronenbergPacBioVerified email at pacb.com
Mark YandellProfessor of Human Genetics, University of UtahVerified email at genetics.utah.edu
Aakrosh RatanDepartment of Genome Sciences, University of VirginiaVerified email at virginia.edu
frank grutznerDeputy Head, School of Biological Sciences, The University of AdelaideVerified email at adelaide.edu.au
Karen D. CrowSan Francisco State UniversityVerified email at sfsu.edu
Rob Leclerc, PhDIndependantVerified email at aya.yale.edu
Jason D. LiebIndependentVerified email at berkeley.edu
Tiana KohlsdorfUniversidade de São Paulo, Universidade de Sao PauloVerified email at usp.br
Stephan C. SchusterReseach Director and Chair in Genomics, SCELSE, Nanyang Technological University SingaporeVerified email at ntu.edu.sg
Geffrey F. StopperDepartment of Biology, Sacred Heart UniversityVerified email at sacredheart.edu
Jens MeilerVanderbilt University & University LeipzigVerified email at meilerlab.org

Vincent J. Lynch

Department of Biological Sciences | University at Buffalo

Verified email at buffalo.edu

Evolution Genomics Developmental Evolution Organismal Biology Molecular Biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples GP Wagner, K Kin, VJ Lynch Theory in biosciences 131, 281-285, 2012	2049	2012
Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs A Kapusta, Z Kronenberg, VJ Lynch, X Zhuo, LA Ramsay, G Bourque, ... PLoS genetics 9 (4), e1003470, 2013	742	2013
Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals VJ Lynch, RD Leclerc, G May, GP Wagner Nature genetics 43 (11), 1154-1159, 2011	475	2011
TP53 copy number expansion is associated with the evolution of increased body size and an enhanced DNA damage response in elephants M Sulak, L Fong, K Mika, S Chigurupati, L Yon, NP Mongan, RD Emes, ... elife 5, e11994, 2016	306	2016
Evolutionary novelties GP Wagner, VJ Lynch Current Biology 20 (2), R48-R52, 2010	295	2010
Ancient transposable elements transformed the uterine regulatory landscape and transcriptome during the evolution of mammalian pregnancy VJ Lynch, MC Nnamani, A Kapusta, K Brayer, SL Plaza, EC Mazur, ... Cell reports 10 (4), 551-561, 2015	273	2015
Inventing an arsenal: adaptive evolution and neofunctionalization of snake venom phospholipase A₂ genes VJ Lynch BMC evolutionary biology 7, 1-14, 2007	249	2007
Transposable elements are the primary source of novelty in primate gene regulation M Trizzino, YS Park, M Holsbach-Beltrame, K Aracena, K Mika, ... Genome research 27 (10), 1623-1633, 2017	247	2017
Resurrecting the role of transcription factor change in developmental evolution VJ Lynch, GP Wagner Evolution 62 (9), 2131-2154, 2008	230	2008
The “fish-specific” Hox cluster duplication is coincident with the origin of teleosts KD Crow, PF Stadler, VJ Lynch, C Amemiya, GP Wagner Molecular Biology and Evolution 23 (1), 121-136, 2006	220	2006
A model based criterion for gene expression calls using RNA-seq data GP Wagner, K Kin, VJ Lynch Theory in Biosciences 132, 159-164, 2013	199	2013
The gene regulatory logic of transcription factor evolution GP Wagner, VJ Lynch Trends in Ecology & Evolution 23 (7), 377-385, 2008	189	2008
Elephantid genomes reveal the molecular bases of woolly mammoth adaptations to the Arctic VJ Lynch, OC Bedoya-Reina, A Ratan, M Sulak, DI Drautz-Moses, ... Cell reports 12 (2), 217-228, 2015	165	2015
Human leukocyte antigen F presents peptides and regulates immunity through interactions with NK cell receptors CL Dulberger, CP McMurtrey, A Hölzemer, KE Neu, V Liu, AM Steinbach, ... Immunity 46 (6), 1018-1029. e7, 2017	138	2017
Regulatory evolution through divergence of a phosphoswitch in the transcription factor CEBPB VJ Lynch, G May, GP Wagner Nature 480 (7377), 383-386, 2011	125	2011
Convergent evolution of endometrial prolactin expression in primates, mice, and elephants through the independent recruitment of transposable elements D Emera, C Casola, VJ Lynch, DE Wildman, D Agnew, GP Wagner Molecular biology and evolution 29 (1), 239-247, 2012	124	2012
Adaptive changes in the transcription factor HoxA-11 are essential for the evolution of pregnancy in mammals VJ Lynch, A Tanzer, Y Wang, FC Leung, B Gellersen, D Emera, ... Proceedings of the National Academy of Sciences 105 (39), 14928-14933, 2008	119	2008
A zombie LIF gene in elephants is upregulated by TP53 to induce apoptosis in response to DNA damage JM Vazquez, M Sulak, S Chigurupati, VJ Lynch Cell reports 24 (7), 1765-1776, 2018	116	2018
HoxA-11 and FOXO1A cooperate to regulate decidual prolactin expression: towards inferring the core transcriptional regulators of decidual genes VJ Lynch, K Brayer, B Gellersen, GP Wagner PloS one 4 (9), e6845, 2009	114	2009
DID EGG-LAYING BOAS BREAK DOLLO'S LAW? PHYLOGENETIC EVIDENCE FOR REVERSAL TO OVIPARITY IN SAND BOAS (ERYX: BOIDAE) VJ Lynch, GP Wagner Evolution 64 (1), 207-216, 2010	102	2010

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