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Shibu Yooseph, Ph.D.
Shibu Yooseph, Ph.D.
Kravis Professor of Integrated Sciences, Claremont McKenna College
Verified email at cmc.edu
Title
Cited by
Cited by
Year
The sequence of the human genome
JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, GG Sutton, HO Smith, ...
science 291 (5507), 1304-1351, 2001
202212001
Structure, function and diversity of the healthy human microbiome
nature 486 (7402), 207-214, 2012
102872012
A framework for human microbiome research
nature 486 (7402), 215-221, 2012
24172012
The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific
DB Rusch, AL Halpern, G Sutton, KB Heidelberg, S Williamson, ...
PLoS biology 5 (3), e77, 2007
23392007
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature biotechnology 35 (8), 725-731, 2017
15932017
Exploring expression data: identification and analysis of coexpressed genes
LJ Heyer, S Kruglyak, S Yooseph
Genome research 9 (11), 1106-1115, 1999
14031999
Essential genes of a minimal bacterium
JI Glass, N Assad-Garcia, N Alperovich, S Yooseph, MR Lewis, M Maruf, ...
Proceedings of the National Academy of Sciences 103 (2), 425-430, 2006
11312006
The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families
S Yooseph, G Sutton, DB Rusch, AL Halpern, SJ Williamson, ...
PLoS biology 5 (3), e16, 2007
10092007
Gut microbiome-based metagenomic signature for non-invasive detection of advanced fibrosis in human nonalcoholic fatty liver disease
R Loomba, V Seguritan, W Li, T Long, N Klitgord, A Bhatt, PS Dulai, ...
Cell metabolism 25 (5), 1054-1062. e5, 2017
9302017
Diet and feeding pattern affect the diurnal dynamics of the gut microbiome
A Zarrinpar, A Chaix, S Yooseph, S Panda
Cell metabolism 20 (6), 1006-1017, 2014
8382014
Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage
CL Dupont, DB Rusch, S Yooseph, MJ Lombardo, R Alexander Richter, ...
The ISME journal 6 (6), 1186-1199, 2012
5172012
A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome
RJ Mural, MD Adams, EW Myers, HO Smith, GLG Miklos, R Wides, ...
Science 296 (5573), 1661-1671, 2002
4832002
Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle
X He, JS McLean, A Edlund, S Yooseph, AP Hall, SY Liu, PC Dorrestein, ...
Proceedings of the National Academy of Sciences 112 (1), 244-249, 2015
4462015
The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples
SJ Williamson, DB Rusch, S Yooseph, AL Halpern, KB Heidelberg, ...
PloS one 3 (1), e1456, 2008
4182008
Analyses of the microbial diversity across the human microbiome
K Li, M Bihan, S Yooseph, BA Methe
PloS one 7 (6), e32118, 2012
3452012
Evaluation of 16S rDNA-based community profiling for human microbiome research
Jumpstart Consortium Human Microbiome Project Data Generation Working Group
PloS one 7 (6), e39315, 2012
3162012
Genomic and functional adaptation in surface ocean planktonic prokaryotes
S Yooseph, KH Nealson, DB Rusch, JP McCrow, CL Dupont, M Kim, ...
Nature 468 (7320), 60-66, 2010
3122010
Whole-genome shotgun assembly and comparison of human genome assemblies
S Istrail, GG Sutton, L Florea, AL Halpern, CM Mobarry, R Lippert, ...
Proceedings of the National Academy of Sciences 101 (7), 1916-1921, 2004
2762004
Library preparation methodology can influence genomic and functional predictions in human microbiome research
MB Jones, SK Highlander, EL Anderson, W Li, M Dayrit, N Klitgord, ...
Proceedings of the National Academy of Sciences 112 (45), 14024-14029, 2015
2142015
Functional tradeoffs underpin salinity-driven divergence in microbial community composition
CL Dupont, J Larsson, S Yooseph, K Ininbergs, J Goll, ...
PloS one 9 (2), e89549, 2014
2052014
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