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Scott Christley
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Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle
EF Kirkness, BJ Haas, W Sun, HR Braig, MA Perotti, JM Clark, SH Lee, ...
Proceedings of the National Academy of Sciences 107 (27), 12168-12173, 2010
5872010
Sequencing of Culex quinquefasciatus Establishes a Platform for Mosquito Comparative Genomics
P Arensburger, K Megy, RM Waterhouse, J Abrudan, P Amedeo, B Antelo, ...
Science 330 (6000), 86-88, 2010
5542010
VectorBase: a data resource for invertebrate vector genomics
D Lawson, P Arensburger, P Atkinson, NJ Besansky, RV Bruggner, ...
Nucleic acids research 37 (suppl_1), D583-D587, 2009
2722009
A topological analysis of the open souce software development community
J Xu, Y Gao, S Christley, G Madey
Proceedings of the 38th Annual Hawaii International Conference on System …, 2005
2422005
Human genomes as email attachments
S Christley, Y Lu, C Li, X Xie
Bioinformatics 25 (2), 274-275, 2009
2132009
Intestinal anastomotic injury alters spatially defined microbiome composition and function
BD Shogan, DP Smith, S Christley, JA Gilbert, O Zaborina, JC Alverdy
Microbiome 2, 1-10, 2014
1602014
iReceptor: a platform for querying and analyzing antibody/B‐cell and T‐cell receptor repertoire data across federated repositories
BD Corrie, N Marthandan, B Zimonja, J Jaglale, Y Zhou, E Barr, ...
Immunological reviews 284 (1), 24-41, 2018
1562018
VectorBase: a home for invertebrate vectors of human pathogens
D Lawson, P Arensburger, P Atkinson, NJ Besansky, RV Bruggner, ...
Nucleic acids research 35 (suppl_1), D503-D505, 2007
1492007
TCRMatch: predicting T-cell receptor specificity based on sequence similarity to previously characterized receptors
WD Chronister, A Crinklaw, S Mahajan, R Vita, Z Koşaloğlu-Yalçın, Z Yan, ...
Frontiers in immunology 12, 640725, 2021
1172021
Fecal microbiota transplant rescues mice from human pathogen mediated sepsis by restoring systemic immunity
SM Kim, JR DeFazio, SK Hyoju, K Sangani, R Keskey, MA Krezalek, ...
Nature communications 11 (1), 2354, 2020
1162020
Reproducibility and reuse of adaptive immune receptor repertoire data
F Breden, ET Luning Prak, B Peters, F Rubelt, CA Schramm, CE Busse, ...
Frontiers in immunology 8, 1418, 2017
1032017
Biophysicochemical motifs in T-cell receptor sequences distinguish repertoires from tumor-infiltrating lymphocyte and adjacent healthy tissue
J Ostmeyer, S Christley, IT Toby, LG Cowell
Cancer research 79 (7), 1671-1680, 2019
992019
Patterns of mesenchymal condensation in a multiscale, discrete stochastic model
S Christley, MS Alber, SA Newman
PLoS computational biology 3 (4), e76, 2007
952007
Parameter inference for discretely observed stochastic kinetic models using stochastic gradient descent
Y Wang, S Christley, E Mjolsness, X Xie
BMC systems biology 4, 1-16, 2010
912010
Application of social network analysis to the study of open source software
J Xu, S Christley, G Madey
The economics of open source software development, 247-269, 2006
902006
Integrative multicellular biological modeling: a case study of 3D epidermal development using GPU algorithms
S Christley, B Lee, X Dai, Q Nie
BMC systems biology 4, 1-23, 2010
892010
Optimization and control of agent-based models in biology: a perspective
G An, BG Fitzpatrick, S Christley, P Federico, A Kanarek, RM Neilan, ...
Bulletin of mathematical biology 79, 63-87, 2017
882017
AIRR community standardized representations for annotated immune repertoires
JA Vander Heiden, S Marquez, N Marthandan, SAC Bukhari, CE Busse, ...
Frontiers in immunology 9, 2206, 2018
832018
The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires
M Pavlović, L Scheffer, K Motwani, C Kanduri, R Kompova, N Vazov, ...
Nature Machine Intelligence 3 (11), 936-944, 2021
742021
Data structures and compression algorithms for high-throughput sequencing technologies
K Daily, P Rigor, S Christley, X Xie, P Baldi
BMC bioinformatics 11, 1-12, 2010
732010
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Articles 1–20