Random walk in orthogonal space to achieve efficient free-energy simulation of complex systems L Zheng, M Chen, W Yang Proceedings of the National Academy of Sciences 105 (51), 20227-20232, 2008 | 348 | 2008 |
Shock-induced shear bands in an energetic molecular crystal: Application of shock-front absorbing boundary conditions to molecular dynamics simulations MJ Cawkwell, TD Sewell, L Zheng, DL Thompson Physical Review B—Condensed Matter and Materials Physics 78 (1), 014107, 2008 | 158 | 2008 |
Melting of Cu under hydrostatic and shock wave loading to high pressures Q An, SN Luo, LB Han, L Zheng, O Tschauner Journal of Physics: Condensed Matter 20 (9), 095220, 2008 | 120 | 2008 |
Practically efficient and robust free energy calculations: Double-integration orthogonal space tempering L Zheng, W Yang Journal of chemical theory and computation 8 (3), 810-823, 2012 | 111 | 2012 |
Simultaneous escaping of explicit and hidden free energy barriers: Application of the orthogonal space random walk strategy in generalized ensemble based conformational sampling L Zheng, M Chen, W Yang The Journal of chemical physics 130 (23), 2009 | 109 | 2009 |
The structure, thermodynamics, and solubility of organic crystals from simulation with a polarizable force field MJ Schnieders, J Baltrusaitis, Y Shi, G Chattree, L Zheng, W Yang, P Ren Journal of Chemical Theory and Computation 8 (5), 1721-1736, 2012 | 98 | 2012 |
Homogeneous nucleation and growth of melt in copper L Zheng, Q An, Y Xie, Z Sun, SN Luo The Journal of chemical physics 127 (16), 2007 | 84 | 2007 |
Molecular dynamics simulations of melting and the glass transition of nitromethane L Zheng, SN Luo, DL Thompson The Journal of chemical physics 124 (15), 2006 | 70 | 2006 |
Molecular dynamics simulations of melting of perfect crystalline hexahydro-1, 3, 5-trinitro-1, 3, 5-s-triazine L Zheng, DL Thompson The Journal of chemical physics 125 (8), 2006 | 64 | 2006 |
Molecular dynamics simulations of shock waves using the absorbing boundary condition: A case study of methane AV Bolesta, L Zheng, DL Thompson, TD Sewell Physical Review B—Condensed Matter and Materials Physics 76 (22), 224108, 2007 | 60 | 2007 |
Molecular Dynamics Simulations of Hexahydro-1,3,5-trinitro-1,3,5-s-triazine (RDX) Using a Combined Sorescu−Rice−Thompson AMBER Force Field PM Agrawal, BM Rice, L Zheng, DL Thompson The Journal of Physical Chemistry B 110 (51), 26185-26188, 2006 | 50 | 2006 |
The relation between shock-state particle velocity and free surface velocity: A molecular dynamics study on single crystal Cu and silica glass SN Luo, LB Han, Y Xie, Q An, L Zheng, K Xia Journal of Applied Physics 103 (9), 2008 | 49 | 2008 |
Practically efficient QM/MM alchemical free energy simulations: the orthogonal space random walk strategy D Min, L Zheng, W Harris, M Chen, C Lv, W Yang Journal of Chemical Theory and Computation 6 (8), 2253-2266, 2010 | 41 | 2010 |
Molecular dynamics simulations of the melting of 1, 3, 3-trinitroazetidine PM Agrawal, BM Rice, L Zheng, GF Velardez, DL Thompson The Journal of Physical Chemistry B 110 (11), 5721-5726, 2006 | 41 | 2006 |
Surface effects on Young’s modulus and hardness of fused silica by nanoindentation study L Zheng, AW Schmid, JC Lambropoulos Journal of materials science 42, 191-198, 2007 | 35 | 2007 |
UV-laser-induced densification of fused silica: a molecular dynamics study L Zheng, JC Lambropoulos, AW Schmid Journal of non-crystalline solids 347 (1-3), 144-152, 2004 | 35 | 2004 |
Essential energy space random walks to accelerate molecular dynamics simulations: convergence improvements via an adaptive-length self-healing strategy L Zheng, W Yang The Journal of chemical physics 129 (1), 2008 | 33 | 2008 |
Payoffs, not tradeoffs, in the adaptation of a virus to ostensibly conflicting selective pressures LW McGee, EW Aitchison, SB Caudle, AJ Morrison, L Zheng, W Yang, ... PLoS genetics 10 (10), e1004611, 2014 | 30 | 2014 |
Enhancing QM/MM molecular dynamics sampling in explicit environments via an orthogonal-space-random-walk-based strategy D Min, M Chen, L Zheng, Y Jin, MA Schwartz, QXA Sang, W Yang The Journal of Physical Chemistry B 115 (14), 3924-3935, 2011 | 28 | 2011 |
Melting dynamics of superheated argon: Nucleation and growth SN Luo, L Zheng, A Strachan, DC Swift The Journal of chemical physics 126 (3), 2007 | 28 | 2007 |