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Dinanath Sulakhe
Dinanath Sulakhe
Duchossois Family Institute, University of Chicago
Verified email at uchicago.edu
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Cited by
Cited by
Year
The grid2003 production grid: Principles and practice
I Foster, J Gieraltowski, S Gose, N Maltsev, E May, A Rodriguez, ...
Proceedings. 13th IEEE International Symposium on High performance …, 2004
1652004
PUMA2—grid-based high-throughput analysis of genomes and metabolic pathways
N Maltsev, E Glass, D Sulakhe, A Rodriguez, MH Syed, T Bompada, ...
Nucleic acids research 34 (suppl_1), D369-D372, 2006
862006
Experiences building Globus Genomics: a next‐generation sequencing analysis service using Galaxy, Globus, and Amazon Web Services
RK Madduri, D Sulakhe, L Lacinski, B Liu, A Rodriguez, K Chard, ...
Concurrency and Computation: Practice and Experience 26 (13), 2266-2279, 2014
852014
The Globus Galaxies platform: delivering science gateways as a service
R Madduri, K Chard, R Chard, L Lacinski, A Rodriguez, D Sulakhe, ...
Concurrency and Computation: Practice and Experience 27 (16), 4344-4360, 2015
602015
Reproducible big data science: A case study in continuous FAIRness
R Madduri, K Chard, M D’Arcy, SC Jung, A Rodriguez, D Sulakhe, ...
PloS one 14 (4), e0213013, 2019
542019
Bacteroidota and Lachnospiraceae integration into the gut microbiome at key time points in early life are linked to infant neurodevelopment
K Oliphant, M Ali, M D’Souza, PD Hughes, D Sulakhe, AZ Wang, B Xie, ...
Gut Microbes 13 (1), 1997560, 2021
462021
Lynx: a database and knowledge extraction engine for integrative medicine
D Sulakhe, S Balasubramanian, B Xie, B Feng, A Taylor, S Wang, ...
Nucleic acids research 42 (D1), D1007-D1012, 2014
442014
CaGrid Workflow Toolkit: A taverna based workflow tool for cancer grid
W Tan, R Madduri, A Nenadic, S Soiland-Reyes, D Sulakhe, I Foster, ...
BMC bioinformatics 11, 1-12, 2010
442010
A case study for cloud based high throughput analysis of NGS data using the globus genomics system
K Bhuvaneshwar, D Sulakhe, R Gauba, A Rodriguez, R Madduri, U Dave, ...
Computational and structural biotechnology journal 13, 64-74, 2015
332015
Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources
D Sulakhe, M D’Souza, S Wang, S Balasubramanian, P Athri, B Xie, ...
Briefings in bioinformatics 20 (5), 1754-1768, 2019
312019
Gnare: automated system for high-throughput genome analysis with grid computational backend
D Sulakhe, A Rodriguez, M D'Souza, M Wilde, V Nefedova, I Foster, ...
Journal of clinical monitoring and computing 19, 361-369, 2005
292005
Gnare: an environment for grid-based high-throughput genome analysis
D Sulakhe, A Rodriguez, M D'Souza, M Wilde, V Nefedova, I Foster, ...
CCGrid 2005. IEEE International Symposium on Cluster Computing and the Grid …, 2005
272005
Scientific workflows as services in caGrid: a Taverna and gRAVI approach
W Tan, K Chard, D Sulakhe, R Madduri, I Foster, S Soiland-Reyes, ...
2009 IEEE International Conference on Web Services, 413-420, 2009
252009
Experiences in building a next-generation sequencing analysis service using galaxy, globus online and Amazon web service
RK Madduri, P Dave, D Sulakhe, L Lacinski, B Liu, IT Foster
Proceedings of the Conference on Extreme Science and Engineering Discovery …, 2013
202013
Unique somatic variants in DNA from urine exosomes of individuals with bladder cancer
X Zhou, P Kurywchak, K Wolf-Dennen, SPY Che, D Sulakhe, M D’Souza, ...
Molecular Therapy-Methods & Clinical Development 22, 360-376, 2021
162021
High-throughput translational medicine: challenges and solutions
D Sulakhe, S Balasubramanian, B Xie, E Berrocal, B Feng, A Taylor, ...
Systems Analysis of Human Multigene Disorders, 39-67, 2014
152014
Grid enabled server for high-throughput analysis of genomes
A Rodriguez, D Sulakhe, E Marland, N Nefedova, M Wilde, N Maltsev
Workshop on Case Studies on Grid Applications, 2004
152004
Absence of gut microbiota is associated with RPE/choroid transcriptomic changes related to age-related macular degeneration pathobiology and decreased choroidal neovascularization
JY Zhang, B Xie, H Barba, U Nadeem, A Movahedan, N Deng, M Spedale, ...
International journal of molecular sciences 23 (17), 9676, 2022
132022
High-fat diet alters the retinal transcriptome in the absence of gut microbiota
D Dao, B Xie, U Nadeem, J Xiao, A Movahedan, M D’souza, V Leone, ...
Cells 10 (8), 2119, 2021
122021
High throughput RNA sequencing of germ-free mouse retina reveals metabolic pathways involved in the gut-retina axis
U Nadeem, B Xie, A Movahedan, M D’Souza, H Barba, N Deng, ...
bioRxiv, 2020.10. 01.318949, 2020
122020
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