| Understanding mechanisms underlying human gene expression variation with RNA sequencing JK Pickrell, JC Marioni, AA Pai, JF Degner, BE Engelhardt, E Nkadori, ... Nature 464 (7289), 768-772, 2010 | 1571 | 2010 |
| DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines JT Bell, AA Pai, JK Pickrell, DJ Gaffney, R Pique-Regi, JF Degner, Y Gilad, ... Genome biology 12 (1), R10, 2011 | 1021 | 2011 |
| DNase I sensitivity QTLs are a major determinant of human expression variation JF Degner, AA Pai, R Pique-Regi, JB Veyrieras, DJ Gaffney, JK Pickrell, ... Nature 482 (7385), 390-394, 2012 | 815 | 2012 |
| Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data R Pique-Regi, JF Degner, AA Pai, DJ Gaffney, Y Gilad, JK Pritchard Genome research 21 (3), 447-455, 2011 | 671 | 2011 |
| Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data JF Degner, JC Marioni, AA Pai, JK Pickrell, E Nkadori, Y Gilad, ... Bioinformatics 25 (24), 3207, 2009 | 643 | 2009 |
| Are drug targets with genetic support twice as likely to be approved? Revised estimates of the impact of genetic support for drug mechanisms on the probability of drug approval EA King, JW Davis, JF Degner PLoS genetics 15 (12), e1008489, 2019 | 553 | 2019 |
| Identification of genetic variants that affect histone modifications in human cells G McVicker, B Van De Geijn, JF Degner, CE Cain, NE Banovich, A Raj, ... Science 342 (6159), 747-749, 2013 | 522 | 2013 |
| The Burmese python genome reveals the molecular basis for extreme adaptation in snakes TA Castoe, APJ de Koning, KT Hall, DC Card, DR Schield, MK Fujita, ... Proceedings of the National Academy of Sciences 110 (51), 20645-20650, 2013 | 332 | 2013 |
| Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels NE Banovich, X Lan, G McVicker, B Van de Geijn, JF Degner, JD Blischak, ... PLoS genetics 10 (9), e1004663, 2014 | 313 | 2014 |
| Dissecting the regulatory architecture of gene expression QTLs DJ Gaffney, JB Veyrieras, JF Degner, R Pique-Regi, AA Pai, GE Crawford, ... Genome biology 13, 1-15, 2012 | 250 | 2012 |
| The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels AA Pai, CE Cain, O Mizrahi-Man, S De Leon, N Lewellen, JB Veyrieras, ... Public Library of Science 8 (10), e1003000, 2012 | 124 | 2012 |
| Metabolic fright responses of different-sized largemouth bass (Micropterus salmoides) to two avian predators show variations in nonlethal energetic costs SJ Cooke, J Steinmetz, JF Degner, EC Grant, DP Philipp Canadian Journal of Zoology 81 (4), 699-709, 2003 | 90 | 2003 |
| Identification of HLA-DRB1 association to adalimumab immunogenicity M Liu, J Degner, JW Davis, KB Idler, A Nader, NM Mostafa, JF Waring PLoS One 13 (4), e0195325, 2018 | 79 | 2018 |
| Promoter shape varies across populations and affects promoter evolution and expression noise IE Schor, JF Degner, D Harnett, E Cannavò, FP Casale, H Shim, ... Nature genetics 49 (4), 550-558, 2017 | 75 | 2017 |
| Genetic variants regulating expression levels and isoform diversity during embryogenesis E Cannavò, N Koelling, D Harnett, D Garfield, FP Casale, L Ciglar, ... Nature 541 (7637), 402-406, 2017 | 65 | 2017 |
| Lineage-resolved enhancer and promoter usage during a time course of embryogenesis JP Reddington, DA Garfield, OM Sigalova, AK Calviello, ... Developmental cell 55 (5), 648-664. e9, 2020 | 55 | 2020 |
| Population genetics and conservation of the threatened southeastern beach mouse (Peromyscus polionotus niveiventris): subspecies and evolutionary units JF Degner, IJ Stout, JD Roth, CL Parkinson Conservation Genetics 8, 1441-1452, 2007 | 48 | 2007 |
| Population pharmacokinetics of elagolix in healthy women and women with endometriosis I Winzenborg, A Nader, AR Polepally, M Liu, J Degner, CE Klein, ... Clinical pharmacokinetics 57, 1295-1306, 2018 | 28 | 2018 |
| Fat frogs, mobile genes: unexpected phylogeographic patterns for the ornate chorus frog (Pseudacris ornata) JF Degner, DM Silva, TD Hether, JM Daza, EA Hoffman Molecular Ecology 19 (12), 2501-2515, 2010 | 26 | 2010 |
| A genetic variant in the BCL2 gene associates with adalimumab response in hidradenitis suppurativa clinical trials and regulates expression of BCL2 M Liu, J Degner, RW Georgantas, A Nader, NM Mostafa, HD Teixeira, ... Journal of Investigative Dermatology 140 (3), 574-582. e2, 2020 | 23 | 2020 |
Jonathan K PritchardStanford UniversityVerified email at stanford.edu
