| QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data P Skums, A Zelikovsky, R Singh, W Gussler, Z Dimitrova, S Knyazev, ... Bioinformatics 34 (1), 163-170, 2018 | 86 | 2018 |
| Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing I Mandric, J Rotman, HT Yang, N Strauli, DJ Montoya, W Van Der Wey, ... Nature communications 11 (1), 3126, 2020 | 67 | 2020 |
| Optimized design of single-cell RNA sequencing experiments for cell-type-specific eQTL analysis I Mandric, T Schwarz, A Majumdar, K Hou, L Briscoe, R Perez, ... Nature communications 11 (1), 5504, 2020 | 61 | 2020 |
| Fast bootstrapping-based estimation of confidence intervals of expression levels and differential expression from RNA-Seq data I Mandric, Y Temate-Tiagueu, T Shcheglova, S Al Seesi, A Zelikovsky, ... Bioinformatics 33 (20), 3302-3304, 2017 | 57 | 2017 |
| Benchmarking of computational error-correction methods for next-generation sequencing data K Mitchell, JJ Brito, I Mandric, Q Wu, S Knyazev, S Chang, LS Martin, ... Genome biology 21, 1-13, 2020 | 54 | 2020 |
| ScaffMatch: scaffolding algorithm based on maximum weight matching I Mandric, A Zelikovsky Bioinformatics 31 (16), 2632-2638, 2015 | 52 | 2015 |
| MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples N LaPierre, S Mangul, M Alser, I Mandric, NC Wu, D Koslicki, E Eskin BMC genomics 20, 1-10, 2019 | 42 | 2019 |
| Rrp6 moonlights in an RNA exosome-independent manner to promote cell survival and gene expression during stress C Wang, Y Liu, SM DeMario, I Mandric, C Gonzalez-Figueroa, ... Cell reports 31 (10), 2020 | 23 | 2020 |
| Inferring metabolic pathway activity levels from RNA-Seq data Y Temate-Tiagueu, SA Seesi, M Mathew, I Mandric, A Rodriguez, K Bean, ... BMC genomics 17, 493-503, 2016 | 16 | 2016 |
| Repeat-aware evaluation of scaffolding tools I Mandric, S Knyazev, A Zelikovsky Bioinformatics 34 (15), 2530-2537, 2018 | 12 | 2018 |
| Comparative transcriptome analysis of Peromyscus leucopus and C3H mice infected with the Lyme disease pathogen AM Gaber, I Mandric, C Nitirahardjo, H Piontkivska, AE Hillhouse, ... Frontiers in Cellular and Infection Microbiology 13, 1115350, 2023 | 11 | 2023 |
| In vitro atlas of dorsal spinal interneurons reveals Wnt signaling as a critical regulator of progenitor expansion S Gupta, R Kawaguchi, E Heinrichs, S Gallardo, S Castellanos, I Mandric, ... Cell reports 40 (3), 2022 | 11 | 2022 |
| Single cell transcriptomic analyses reveal the impact of bHLH factors on human retinal organoid development X Zhang, I Mandric, KH Nguyen, TTT Nguyen, M Pellegrini, JCR Grove, ... Frontiers in Cell and Developmental Biology 9, 653305, 2021 | 11 | 2021 |
| Scaffolding algorithms I Mandric, J Lindsay, II Măndoiu, A Zelikovsky Computational Methods for Next Generation Sequencing Data Analysis, 105-131, 2016 | 10 | 2016 |
| Pipeline for analyzing activity of metabolic pathways in planktonic communities using metatranscriptomic data FM Rondel, R Hosseini, B Sahoo, S Knyazev, I Mandric, F Stewart, ... Journal of Computational Biology 28 (8), 842-855, 2021 | 5 | 2021 |
| Metabolic analysis of metatranscriptomic data from planktonic communities I Mandric, S Knyazev, C Padilla, F Stewart, II Măndoiu, A Zelikovsky Bioinformatics Research and Applications: 13th International Symposium …, 2017 | 5 | 2017 |
| Profiling adaptive immune repertoires across multiple human tissues by RNA Sequencing S Mangul, M Igor, H Taegyun Yang, N Strauli, D Montoya, J Rotman, ... bioRxiv, 089235, 2016 | 5 | 2016 |
| BATMAN: fast and accurate integration of single-cell RNA-seq datasets via minimum-weight matching I Mandric, BL Hill, MK Freund, M Thompson, E Halperin IScience 23 (6), 2020 | 4 | 2020 |
| Estimating enzyme participation in metabolic pathways for microbial communities from RNA-seq data F Rondel, R Hosseini, B Sahoo, S Knyazev, I Mandric, F Stewart, ... Bioinformatics Research and Applications: 16th International Symposium …, 2020 | 3 | 2020 |
| Silp3: Maximum likelihood approach to scaffolding I Mandric, J Lindsay, I Măndoiu, A Zelikovsky 2014 IEEE 4th International Conference on Computational Advances in Bio and …, 2014 | 3 | 2014 |
Alexander ZelikovskyDistinguished University Professor at Georgia State UniversityVerified email at gsu.edu
