| Batch effects and the effective design of single-cell gene expression studies PY Tung, JD Blischak, CJ Hsiao, DA Knowles, JE Burnett, JK Pritchard, ... Scientific reports 7 (1), 39921, 2017 | 365 | 2017 |
| Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels NE Banovich, X Lan, G McVicker, B Van de Geijn, JF Degner, JD Blischak, ... PLoS genetics 10 (9), e1004663, 2014 | 313 | 2014 |
| A quick introduction to version control with Git and GitHub JD Blischak, ER Davenport, G Wilson PLoS computational biology 12 (1), e1004668, 2016 | 276 | 2016 |
| Determining the genetic basis of anthracycline-cardiotoxicity by molecular response QTL mapping in induced cardiomyocytes DA Knowles, CK Burrows, JD Blischak, KM Patterson, DJ Serie, N Norton, ... Elife 7, e33480, 2018 | 111 | 2018 |
| Mycobacterial infection induces a specific human innate immune response JD Blischak, L Tailleux, A Mitrano, LB Barreiro, Y Gilad bioRxiv, 2015 | 77 | 2015 |
| Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis CJ Hsiao, PY Tung, JD Blischak, JE Burnett, KA Barr, KK Dey, ... Genome research 30 (4), 611-621, 2020 | 76 | 2020 |
| Discovery and characterization of variance QTLs in human induced pluripotent stem cells AK Sarkar, PY Tung, JD Blischak, JE Burnett, YI Li, M Stephens, Y Gilad PLoS genetics 15 (4), e1008045, 2019 | 71 | 2019 |
| Creating and sharing reproducible research code the workflowr way JD Blischak, P Carbonetto, M Stephens F1000Research 8, 2019 | 67 | 2019 |
| A comparative study of endoderm differentiation in humans and chimpanzees LE Blake, SM Thomas, JD Blischak, CJ Hsiao, C Chavarria, M Myrthil, ... Genome biology 19, 1-18, 2018 | 32 | 2018 |
| Predicting susceptibility to tuberculosis based on gene expression profiling in dendritic cells JD Blischak, L Tailleux, M Myrthil, C Charlois, E Bergot, A Dinh, G Morizot, ... Scientific Reports 7 (1), 5702, 2017 | 19 | 2017 |
| Patterns of transcriptional response to 1, 25-dihydroxyvitamin D3 and bacterial lipopolysaccharide in primary human monocytes SN Kariuki, JD Blischak, S Nakagome, DB Witonsky, A Di Rienzo G3: Genes, Genomes, Genetics 6 (5), 1345-1355, 2016 | 11 | 2016 |
| Batch effects and the effective design of single-cell gene expression studies. Sci Rep 7: 39921 PY Tung, JD Blischak, CJ Hsiao, DA Knowles, JE Burnett, JK Pritchard, ... | 9 | 2017 |
| Mycobacterial infection induces a specific human innate immune response. Sci Rep. 2015; 5: 16882 JD Blischak, L Tailleux, A Mitrano, LB Barreiro, Y Gilad Epub 2015/11/21. https://doi. org/10.1038/srep16882 PMID: 26586179, 0 | 8 | |
| A Methodological Assessment and Characterization of Genetically-Driven Variation in Three Human Phosphoproteomes BW Engelmann, CJ Hsiao, JD Blischak, Y Fourne, Z Khan, M Ford, ... Scientific Reports 8 (1), 12106, 2018 | 3 | 2018 |
| OmicNavigator: open-source software for the exploration, visualization, and archival of omic studies TR Ernst, JD Blischak, P Nordlund, J Dalen, J Moore, A Bhamidipati, ... BMC bioinformatics 25 (1), 162, 2024 | 1 | 2024 |
| The Effects of Growth Hormone and Insulin-Like Growth Factor-1 Treatments on Hepatic Gene Expression in Obese and Diabetic Mice with Nonalcoholic Fatty Liver Disease JD Blischak Ohio University, 2010 | 1 | 2010 |
| swcarpentry/shell-novice: Software Carpentry: the UNIX shell, June 2019 G Wilson, G Capes, GA Devenyi, C Koch, R Silva, A Srinath, C Morris, ... | | 2019 |
| swcarpentry/sql-novice-survey: Software Carpentry: Using SQL and Databases, June 2019 G Wilson, R Silva, A Boughton, SJ McKay, R Rampin, T Guignard, ... | | 2019 |
| Preliminary list of links and DOI's for teaching materials for 2016 school. C Gillespie, I Gonzalez, J Blischak, D Haine, C Koch, D Chen, G Devenyi, ... Zenodo, 2016 | | 2016 |
| Investigating susceptibility to tuberculosis using functional genomics approaches JD Blischak The University of Chicago, 2016 | | 2016 |
Yoav GiladUniversity of ChicagoVerified email at uchicago.edu
