| Structural insights into the activation of metabotropic glutamate receptors A Koehl, H Hu, D Feng, B Sun, Y Zhang, MJ Robertson, M Chu, ... Nature 566 (7742), 79-84, 2019 | 328 | 2019 |
| Conformational transitions of a neurotensin receptor 1–Gi1 complex HE Kato, Y Zhang, H Hu, CM Suomivuori, FMN Kadji, J Aoki, ... Nature 572 (7767), 80-85, 2019 | 250 | 2019 |
| Diverse GPCRs exhibit conserved water networks for stabilization and activation AJ Venkatakrishnan, AK Ma, R Fonseca, NR Latorraca, B Kelly, RM Betz, ... Proceedings of the National Academy of Sciences 116 (8), 3288-3293, 2019 | 151 | 2019 |
| qFit-ligand Reveals Widespread Conformational Heterogeneity of Drug-Like Molecules in X-Ray Electron Density Maps GCP van Zundert, BM Hudson, SHP de Oliveira, DA Keedy, R Fonseca, ... Journal of Medicinal Chemistry 61 (24), 11183-11198, 2018 | 54 | 2018 |
| Uncovering patterns of atomic interactions in static and dynamic structures of proteins AJ Venkatakrishnan, R Fonseca, AK Ma, SA Hollingsworth, ... BioRxiv, 840694, 2019 | 49 | 2019 |
| Characterizing RNA ensembles from NMR data with kinematic models R Fonseca, DV Pachov, J Bernauer, H van den Bedem Nucleic Acids Research 42 (15), 9562-9572, 2014 | 29 | 2014 |
| Protein structure prediction using bee colony optimization metaheuristic R Fonseca, M Paluszewski, P Winter Journal of Mathematical Modelling and Algorithms 9 (2), 181-194, 2010 | 23 | 2010 |
| Predicting dihedral angle probability distributions for protein coil residues from primary sequence using neural networks G Helles, R Fonseca BMC bioinformatics 10, 1-8, 2009 | 19 | 2009 |
| Faster exact algorithm for computing Steiner trees in higher dimensional Euclidean spaces R Fonseca, M Brazil, P Winter, M Zachariasen 11th DIMACS Implementation Challenge Workshop, 2014 | 17 | 2014 |
| Ranking beta sheet topologies with applications to protein structure prediction R Fonseca, G Helles, P Winter Journal of Mathematical Modelling and Algorithms 10, 357-369, 2011 | 17 | 2011 |
| Coupled Motions in β2AR:Gαs Conformational Ensembles DV Pachov, R Fonseca, D Arnol, J Bernauer, H van den Bedem Journal of Chemical Theory and Computation 12 (3), 946-956, 2016 | 14 | 2016 |
| Frustration‐guided motion planning reveals conformational transitions in proteins D Budday, R Fonseca, S Leyendecker, H van den Bedem Proteins: Structure, Function, and Bioinformatics 85 (10), 1795-1807, 2017 | 12 | 2017 |
| Collision‐free poisson motion planning in ultra high‐dimensional molecular conformation spaces R Fonseca, D Budday, H van den Bedem Journal of Computational Chemistry 39 (12), 711-720, 2018 | 11 | 2018 |
| Fast, clash-free RNA conformational morphing using molecular junctions A Héliou, D Budday, R Fonseca, H van den Bedem Bioinformatics 33 (14), 2114-2122, 2017 | 8 | 2017 |
| Bounding volumes for proteins: a comparative study R Fonseca, P Winter Journal of Computational Biology 19 (10), 1203-1213, 2012 | 8 | 2012 |
| KGSrna: efficient 3D kinematics-based sampling for nucleic acids R Fonseca, H van den Bedem, J Bernauer Research in Computational Molecular Biology: 19th Annual International …, 2015 | 7 | 2015 |
| Driving structural transitions in molecular simulations using the nonequilibrium candidate Monte Carlo A Kurut, R Fonseca, W Boomsma The Journal of Physical Chemistry B 122 (3), 1195-1204, 2017 | 6 | 2017 |
| Steiner tree heuristics in Euclidean d-space A Olsen, S Lorenzen, R Fonseca, P Winter Proc. of the 11th DIMACS Implementation Challenge, 2014 | 6 | 2014 |
| Probing RNA native conformational ensembles with structural constraints R Fonseca, H van den Bedem, J Bernauer Journal of Computational Biology 23 (5), 362-371, 2016 | 5 | 2016 |
| Stable networks of water-mediated interactions are conserved in activation of diverse GPCRs AJ Venkatakrishnan, AK Ma, R Fonseca, NR Latorraca, B Kelly, RM Betz, ... BioRxiv, 351502, 2018 | 4 | 2018 |
Brian KobilkaStanford UniversityVerified email at stanford.edu
