| Insights into the phylogeny and coding potential of microbial dark matter C Rinke, P Schwientek, A Sczyrba, NN Ivanova, IJ Anderson, JF Cheng, ... Nature 499 (7459), 431-437, 2013 | 2512 | 2013 |
| Metagenomic discovery of biomass-degrading genes and genomes from cow rumen M Hess, A Sczyrba, R Egan, TW Kim, H Chokhawala, G Schroth, S Luo, ... Science 331 (6016), 463-467, 2011 | 1526 | 2011 |
| Severe COVID-19 is marked by a dysregulated myeloid cell compartment J Schulte-Schrepping, N Reusch, D Paclik, K Baßler, S Schlickeiser, ... Cell 182 (6), 1419-1440. e23, 2020 | 1438 | 2020 |
| Critical assessment of metagenome interpretation—a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017 | 825 | 2017 |
| Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean BK Swan, M Martinez-Garcia, CM Preston, A Sczyrba, T Woyke, D Lamy, ... Science 333 (6047), 1296-1300, 2011 | 594 | 2011 |
| Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean BK Swan, B Tupper, A Sczyrba, FM Lauro, M Martinez-Garcia, ... Proceedings of the National Academy of Sciences 110 (28), 11463-11468, 2013 | 372 | 2013 |
| Longitudinal multi-omics analyses identify responses of megakaryocytes, erythroid cells, and plasmablasts as hallmarks of severe COVID-19 JP Bernardes, N Mishra, F Tran, T Bahmer, L Best, JI Blase, D Bordoni, ... Immunity 53 (6), 1296-1314. e9, 2020 | 341 | 2020 |
| Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project JA Gilbert, F Meyer, D Antonopoulos, P Balaji, CT Brown, CT Brown, ... Standards in genomic sciences 3, 243-248, 2010 | 321 | 2010 |
| UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota JH Campbell, P O’Donoghue, AG Campbell, P Schwientek, A Sczyrba, ... Proceedings of the National Academy of Sciences 110 (14), 5540-5545, 2013 | 320 | 2013 |
| Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022 | 281 | 2022 |
| Early IFN-α signatures and persistent dysfunction are distinguishing features of NK cells in severe COVID-19 B Krämer, R Knoll, L Bonaguro, M ToVinh, J Raabe, ... Immunity 54 (11), 2650-2669. e14, 2021 | 215 | 2021 |
| Expansion of the global RNA virome reveals diverse clades of bacteriophages U Neri, YI Wolf, S Roux, AP Camargo, B Lee, D Kazlauskas, IM Chen, ... Cell 185 (21), 4023-4037. e18, 2022 | 195 | 2022 |
| Decontamination of MDA reagents for single cell whole genome amplification T Woyke, A Sczyrba, J Lee, C Rinke, D Tighe, S Clingenpeel, ... PloS one 6 (10), e26161, 2011 | 187 | 2011 |
| Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage TW Ghylin, SL Garcia, F Moya, BO Oyserman, P Schwientek, KT Forest, ... The ISME journal 8 (12), 2503-2516, 2014 | 180 | 2014 |
| Back to the future of soil metagenomics J Nesme, W Achouak, SN Agathos, M Bailey, P Baldrian, D Brunel, ... Frontiers in microbiology 7, 73, 2016 | 178 | 2016 |
| CAMISIM: simulating metagenomes and microbial communities A Fritz, P Hofmann, S Majda, E Dahms, J Dröge, J Fiedler, TR Lesker, ... Microbiome 7, 1-12, 2019 | 175 | 2019 |
| Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates I Maus, DE Koeck, KG Cibis, S Hahnke, YS Kim, T Langer, J Kreubel, ... Biotechnology for biofuels 9, 1-28, 2016 | 174 | 2016 |
| Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges J Kamke, A Sczyrba, N Ivanova, P Schwientek, C Rinke, K Mavromatis, ... The ISME journal 7 (12), 2287-2300, 2013 | 146 | 2013 |
| EMMA: a platform for consistent storage and efficient analysis of microarray data M Dondrup, A Goesmann, D Bartels, J Kalinowski, L Krause, B Linke, ... Journal of biotechnology 106 (2-3), 135-146, 2003 | 128 | 2003 |
| Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants Y Stolze, A Bremges, M Rumming, C Henke, I Maus, A Pühler, A Sczyrba, ... Biotechnology for biofuels 9, 1-18, 2016 | 121 | 2016 |
Tanja WoykeDOE Joint Genome InstituteVerified email at lbl.gov
