Pjotr Prins

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ritsert jansenProfessor of Bioinformatics, Dean of Talent DevelopmentVerified email at rug.nl
Danny ArendsNorthumbria UniversityVerified email at northumbria.ac.uk
Robert W WilliamsProfessor of Genetics, Genomics and Informatics, UTHSCVerified email at uthsc.edu
Karl BromanUniversity of Wisconsin-MadisonVerified email at wisc.edu
Erik GarrisonAssociate Professor, University of Tennessee Health Science CenterVerified email at uthsc.edu
Megan K MulliganUniversity of Tennessee Health Science CenterVerified email at uthsc.edu
Edwin CuppenHoogleraar Humane GeneticaVerified email at umcutrecht.nl
Toshiaki KatayamaDatabase Center for Life ScienceVerified email at dbcls.jp
I.J. NijmanVerified email at umcutrecht.nl
Saunak SenProfessor of Biostatistics, University of Tennessee Health Science CenterVerified email at uthsc.edu
Lu LuUniversity of Tennessee Health Science CenterVerified email at uthsc.edu
Albert J. VilellaIndependent Bioinformatics ScientistVerified email at zoetis.com
George GithinjiKEMRI-Wellcome Trust Research ProgrammeVerified email at kemri-wellcome.org
Gary ChurchillThe Jackson LaboratoryVerified email at jax.org
Joep de LigtLead Data @ Hartwig Medical Foundation (NL)Verified email at hartwigmedicalfoundation.nl
Jan KammengaWageningen University, The NetherlandsVerified email at wur.nl
Yang Li, PhDProfessor of Computational Biology, Director of CiiM, Helmholtz Centre for Infection Research (HZI)Verified email at helmholtz-hzi.de
Rainer BreitlingProfessor of Systems Biology, Manchester Institute of Biotechnology, University of ManchesterVerified email at manchester.ac.uk
Ronald PlasterkVerified email at tiscali.nl
Khyobeni MozhuiUniversity of Tennessee Health Science CenterVerified email at uthsc.edu

Pjotr Prins

Associate Professor

Verified email at uthsc.edu - Homepage

Genetics biomedical biology bioinformatics


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Sambamba: fast processing of NGS alignment formats A Tarasov, AJ Vilella, E Cuppen, IJ Nijman, P Prins Bioinformatics 31 (12), 2032-2034, 2015	1907	2015
Tissue-specific mutation accumulation in human adult stem cells during life F Blokzijl, J De Ligt, M Jager, V Sasselli, S Roerink, N Sasaki, M Huch, ... Nature 538 (7624), 260-264, 2016	940	2016
A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023	584	2023
R/qtl: high-throughput multiple QTL mapping D Arends, P Prins, RC Jansen, KW Broman Bioinformatics 26 (23), 2990-2992, 2010	455	2010
R/qtl2: software for mapping quantitative trait loci with high-dimensional data and multiparent populations KW Broman, DM Gatti, P Simecek, NA Furlotte, P Prins, Ś Sen, BS Yandell, ... Genetics 211 (2), 495-502, 2019	378	2019
Mapping Determinants of Gene Expression Plasticity by Genetical Genomics in C. elegans Y Li, OA Alvarez, EW Gutteling, M Tijsterman, J Fu, JAG Riksen, ... PLoS genetics 2 (12), e222, 2006	343	2006
BioRuby: bioinformatics software for the Ruby programming language N Goto, P Prins, M Nakao, R Bonnal, J Aerts, T Katayama Bioinformatics 26 (20), 2617-2619, 2010	221	2010
Big data, but are we ready? O Trelles, P Prins, M Snir, RC Jansen Nature Reviews Genetics 12 (3), 224-224, 2011	208	2011
GeneNetwork: a toolbox for systems genetics MK Mulligan, K Mozhui, P Prins, RW Williams Systems genetics: Methods and protocols, 75-120, 2017	181	2017
A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar E Garrison, ZN Kronenberg, ET Dawson, BS Pedersen, P Prins PLoS Computational Biology 18 (5), e1009123, 2022	178	2022
A Secreted SPRY Domain-Containing Protein (SPRYSEC) from the Plant-Parasitic Nematode Globodera rostochiensis Interacts with a CC-NB-LRR Protein from a … S Rehman, W Postma, T Tytgat, P Prins, L Qin, H Overmars, J Vossen, ... Molecular plant-microbe interactions 22 (3), 330-340, 2009	136	2009
A platform for experimental precision medicine: The extended BXD mouse family DG Ashbrook, D Arends, P Prins, MK Mulligan, S Roy, EG Williams, ... Cell systems 12 (3), 235-247. e9, 2021	127	2021
ODGI: understanding pangenome graphs A Guarracino, S Heumos, S Nahnsen, P Prins, E Garrison Bioinformatics 38 (13), 3319-3326, 2022	104	2022
A genome-wide genetic map of NB-LRR disease resistance loci in potato E Bakker, T Borm, P Prins, E van der Vossen, G Uenk, M Arens, J de Boer, ... Theoretical and Applied Genetics 123, 493-508, 2011	89	2011
Building pangenome graphs E Garrison, A Guarracino, S Heumos, F Villani, Z Bao, L Tattini, ... Nature Methods, 1-5, 2024	84	2024
GenEST, a powerful bidirectional link between cDNA sequence data and gene expression profiles generated by cDNA-AFLP L Qin, P Prins, JT Jones, H Popeijus, G Smant, J Bakker, J Helder Nucleic Acids Research 29 (7), 1616-1622, 2001	70	2001
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains T Katayama, MD Wilkinson, KF Aoki-Kinoshita, S Kawashima, ... Journal of biomedical semantics 5, 1-13, 2014	69	2014
Identification of imprinted genes subject to parent-of-origin specific expression in Arabidopsis thalianaseeds PC McKeown, S Laouielle-Duprat, P Prins, P Wolff, MW Schmid, ... BMC plant biology 11, 1-20, 2011	64	2011
An integrated systems genetics and omics toolkit to probe gene function H Li, X Wang, D Rukina, Q Huang, T Lin, V Sorrentino, H Zhang, ... Cell systems 6 (1), 90-102. e4, 2018	59	2018
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows T Katayama, K Arakawa, M Nakao, K Ono, KF Aoki-Kinoshita, ... Journal of biomedical semantics 1, 1-19, 2010	55	2010

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